Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g02039 ATGTCTTCTAAGGTTCTGGGGCATTCACTTTATCTCCCACATGCGGCATCCTGGAGAAGTCATAGTCAACCTAGACGATCTGGGAAGTCAACCAGAGTAACTGCAATGATGACTGCTCCCAGTGCGACCGGGCTGCATACACGTAGCTTCCTGGGATTAAGAATTGCCCATCCTCTGGATTTTGCAGAGAGACGCATGCATGGTAACCTTTCCGCTATGTCAAAACAGGGTAGAAGAGGCAGGGGAGTAGCGATTAAGGCTATGTTTGAGCGTTTTACAGAAAAAGCAATTAAAGTTATAATGCTTGCTCAAGAGGAAGCAAGAAGGCTTGGGCATAATTTTGTTGGAACAGAGCAGATTCTATTGGGACTCATTGGTGAAGGCACTGGTATAGCTGCTAAGGTCCTGAAGTCCATGGGGATCAATCTGAAAGATGCCCGTGTCGAAGTAGAAAAGATCATTGGAAGAGGAAGTGGATTCGTTGCTGTTGAGATACCCTTTACTCCCCGTGCTAAACGGGTTTTGGAACTCTCACTGGAGGAAGCACGTCAACTTGGTCACAATTACATTGGATCAGAACACCTGCTCTTGGGACTGCTTCGTGAGGGGGAGGGGGTAGCTGCACGTGTCCTTGAAAATCTCGGAGCTGATCCAACTAACATTCGAACACAGGTAATTCGCATGGTTGGTGAGAGCTCAGACAATGTCACTGCCACTGTTGGTGGATCCTCCACTGGCAATAAAATGCCAACTTTGGAAGAGTATGGTACTAATTTGACAAAGTTAGCCGAGGAGGGTAAATTGGATCCCGTTGTCGGAAGACAACCACAAATTGAACGTGTGACCCAAATCTTGGGTAGGCGTACCAAAAATAATCCGTGTCTTATTGGAGAACCTGGTGTTGGTAAAACTGCCATTGCTGAAGGTCTTGCTCAACGAATTGCAAATGGTGATGTCCCTGAAACTATAGAGGGGAAGAAGGTTATTACCCTGGATATGGGTCTACTTGTGGCTGGCACTAAGTATCGTGGAGAGTTCGAAGAAAGATTGAAGAAATTAATGGAGGAAATTAAGCAAAGTGATGAAATAATACTTTTCATTGACGAGGTGCACACCTTGATTGGAGCTGGAGCAGCTGAAGGGGCAATTGATGCTGCAAACATTCTAAAACCAGCTCTTGCAAGGGGTGAACTGCAGTGCATAGGAGCCACAACACTAGATGAATACAGGAAACACATTGAAAAAGACCCAGCCTTGGAAAGACGATTTCAACCTGTTAAAGTGCCTGAACCTACAGTGGATGAGACGATACAGATCTTGAAAGGACTTCGAGAACGTTATGAAATTCACCACAAGCTCCGGTACACTGATGAATCATTGGTAGCTGCTGCGAATCTGTCATATCAGTACATTAGTGACCGTTTCTTGCCTGACAAAGCCATAGACTTGATTGATGAAGCTGGTTCGAGGGTACGGTTGCGCCATGCACAGCTACCTGAAGATGCTAGAGAACTGGATAAGGAGCTCAGACAAATTGTGAAGGAGAAGGAGGAAGCTGTTCGCAACCAAGACTTTGAAAAAGCTGGAGAACTACGTGATCGGGAAATGGATCTCAAGGCACAAATTTCAGCTCTTGTGGAAAAAAACAAGGAGATGACCAAAGCTGAGAGTGAGGATGGAGATGGAGGTCCTATTGTAACTGAAGCAGATATTGGACACATCGTCTCCTCCTGGACAGGAATTCCTGTTGAGAAGGTGTCAGCTGATGAATCTGATCGTCTGCTCAAGATGGAAGAGACACTCCACAAACGAATTATTGGTCAGGATGAAGCTGTGGTAGCCATTAGCAGGGCCATTCGCAGAGCTCGTGTTGGACTGAAGAATCCTAATCGCCCCATTGCAAGCTTTATCTTTTCTGGCCCAACTGGTGTTGGGAAGTCTGAACTTGCTAAAGCATTGGCTGCGTACTACTTTGGCTCAGAAGAAGCCATGATTCGTCTTGACATGAGTGAATTCATGGAAAGGCACACAGTGTCTAAGCTCATTGGTTCACCTCCAGGGTATGTTGGTTATACCGAGGGGGGCCAGCTCACTGAGGCAGTTAGACGTCGCCCTTACACTGTTGTGCTCTTTGATGAGATTGAAAAGGCGCACCCTGATGTATTCAACATGATGCTTCAAATTCTCGAGGATGGGAGGCTGACAGACAGCAAGGGAAGAACTGTTGACTTCAAGAATACACTTCTGATAATGACATCAAACGTGGGTAGCAGTGTGATCGAGAAAGGTCCCCGTCGACGAATGGGATTTGACCTTGACTATGATAAGAAGAAGGACAATGAGGAGGAAACCAGTTACTCTCATATCAAGAGCTTGGTTTCAGACGAGTTGAAACGATATTTCAGGCCAGAATTTTTGAATAGATTGGATGAGAAAATTGTCTTCAGGCAACTTACAAAGCTGGAAGTAAAGGAGATAGCGGACATAATGTTGAAGGAGGTTTTTGACAGACTCAAGGCCAAAGAAATTGAGCTCCAAGTGACCGAGAAATTCAGGGACAAAGTGGTAGATGCGGGTTACAATCCAAAGTATGGGGCGAGGCCACTGAGAAGAGCCATAATGAGACTTTTGGAGGACTCCATGGCTGAAAAGATGCTTCGGAGAGAGATCAAAGAAGGTGACTCTGTTATCGTGGATGTTGATTCGAATGGAAAAGTCATCGTTCTGAACGGTAGCAGCGGGGCAACCACGGAACCTTTGCCAGAGCCACTTCCTGTGTAA 2781 0.4588 MSSKVLGHSLYLPHAASWRSHSQPRRSGKSTRVTAMMTAPSATGLHTRSFLGLRIAHPLDFAERRMHGNLSAMSKQGRRGRGVAIKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESSDNVTATVGGSSTGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDESLVAAANLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEDARELDKELRQIVKEKEEAVRNQDFEKAGELRDREMDLKAQISALVEKNKEMTKAESEDGDGGPIVTEADIGHIVSSWTGIPVEKVSADESDRLLKMEETLHKRIIGQDEAVVAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGPRRRMGFDLDYDKKKDNEEETSYSHIKSLVSDELKRYFRPEFLNRLDEKIVFRQLTKLEVKEIADIMLKEVFDRLKAKEIELQVTEKFRDKVVDAGYNPKYGARPLRRAIMRLLEDSMAEKMLRREIKEGDSVIVDVDSNGKVIVLNGSSGATTEPLPEPLPV* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g02039 926 Gene3D - 584 816 IPR027417 -
Pte1g02039 926 Coils Coil 343 363 - -
Pte1g02039 926 Gene3D UVR domain 498 556 - -
Pte1g02039 926 FunFam ATP-dependent Clp protease ATP-binding subunit 433 518 - -
Pte1g02039 926 Pfam AAA lid domain 432 533 IPR041546 -
Pte1g02039 926 ProSitePatterns Chaperonins clpA/B signature 2. 666 684 IPR028299 -
Pte1g02039 926 PANTHER ATP-DEPENDENT CLP PROTEASE 93 905 - -
Pte1g02039 926 SUPERFAMILY Double Clp-N motif 90 231 IPR036628 -
Pte1g02039 926 FunFam ATP-dependent Clp protease ATP-binding subunit ClpC 88 236 - -
Pte1g02039 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 581 906 IPR027417 -
Pte1g02039 926 ProSiteProfiles UVR domain profile. 506 541 IPR001943 GO:0005515
Pte1g02039 926 Gene3D - 818 916 - -
Pte1g02039 926 Gene3D - 434 578 - -
Pte1g02039 926 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 681 699 IPR001270 GO:0005524
Pte1g02039 926 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 743 757 IPR001270 GO:0005524
Pte1g02039 926 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 636 654 IPR001270 GO:0005524
Pte1g02039 926 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 710 728 IPR001270 GO:0005524
Pte1g02039 926 SMART AAA_5 632 778 IPR003593 GO:0016887
Pte1g02039 926 SMART AAA_5 289 429 IPR003593 GO:0016887
Pte1g02039 926 Pfam Clp amino terminal domain, pathogenicity island component 179 230 IPR004176 -
Pte1g02039 926 Pfam Clp amino terminal domain, pathogenicity island component 103 155 IPR004176 -
Pte1g02039 926 FunFam ATP-dependent chaperone ClpB 818 911 - -
Pte1g02039 926 SMART ClpB_D2_small_2 818 908 IPR019489 -
Pte1g02039 926 FunFam ATP-dependent Clp protease subunit 585 816 - -
Pte1g02039 926 Gene3D - 240 432 IPR027417 -
Pte1g02039 926 Coils Coil 502 522 - -
Pte1g02039 926 ProSitePatterns Chaperonins clpA/B signature 1. 384 396 IPR018368 GO:0005524
Pte1g02039 926 FunFam Chaperone clpB 1, putative 241 432 - -
Pte1g02039 926 ProSiteProfiles Clp repeat (R) domain profile. 89 231 IPR004176 -
Pte1g02039 926 CDD RecA-like_ClpB_Hsp104-like 593 815 - -
Pte1g02039 926 Coils Coil 538 558 - -
Pte1g02039 926 Pfam C-terminal, D2-small domain, of ClpB protein 818 898 IPR019489 -
Pte1g02039 926 Pfam AAA domain (Cdc48 subfamily) 631 811 IPR003959 GO:0005524|GO:0016887
Pte1g02039 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 527 IPR027417 -
Pte1g02039 926 Gene3D - 88 238 IPR036628 -
Pte1g02039 926 Pfam ATPase family associated with various cellular activities (AAA) 294 410 IPR003959 GO:0005524|GO:0016887
Pte1g02039 926 CDD AAA 272 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g02039 Pte-Chr1 41481811 41487223 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g02039 K03696 - gmx:100804035 1519.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g02039 1 41481811 41487223 Pte1g02039 1 41481811 41487223 RCT