Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte1g01973 | ATGGATCCGAACCCGAATCGCTTCCCCATACTCTCCTACGTCATGGCCCGACTACCGTCTTTCGCCCCCAAAATTCCTAACTCTCATTCAGAGGATGATCACGACATCGAACAGCCGTCGCCTGCGTTGTCGCGAAAGCGGATCGATTCTTCAACTGACCATGAAATCGAAACTCAAATGCCCCAACTGACTGACCCGATACTTTTGGAGGCTATGAAGCGGGCGATATCTGAAGTGGCAGAAACTCGATCTGTACTTCGGGTCCTAGGTGAGCGACCCGACCATGAAACCGTCGACAGGGCTAAGATGAAGCTTGCCGAAATCGATGCTGATCTTTCTGGACAGCTCGATGAAGTCGCGCTCTCGCCTGGTTCAGTTGACATCGAAGGGTCCCAATGGCGGGACGTGAGCCTGAGTGAGACTAATAAAGGAGTGGAGAAGGAGAAGCAAGCGTACCAAGCAATAATTAGCTTAGATGAGATGCATGAGGCTTATGAGAAGCTTCTCAAGGATGCGGAGCAAAGGTTAGCCAAGATTTACGAGTCTGCTGGAGGCACAGTTCCCGAGGAAGAAATGCCGGAAAAAGAGGAGGAGGTGAATGAAGAGGTTGTGGGTATACTGCAGGAGGCCTTTGGAAAAGGGTTGGAGCGGATCGATCTTTCGGATCGGCGGTTACGGTATATGCCCGAGGCTTTTGGCCGTATCCGTTCGTTAGCGGTGCTTAATGTTTCATCTAATCAACTCAAGGTTATACCTGACTCGGTTGCTGGATTAGAAAATCTCGAAGAGCTGAATGTCTCTTCAAATGTTCTACAATCACTGCCGGATTCAATTGGCTTGATGCAAAAGTTGAAGAGCCTGAACATCTCAGGAAATAAGCTTGCGGCTCTTCCTGACACGATTTGTCATTGCAGGTCATTGGTTGCTTTGGACGCAAGCTACAACTATCTGTCATACTTGCCAACAAATTTGGGACTTGAATTGTCAAAACTACAGAATCTCTCAGTTCATTGCAACAAGCTTCGCTCATTTCCTTCATCTATCTGTGAGATGAAGTCTTTGTGCTATCTCGATGCCCACTTCAATGAACTCCATGGACTGCCTGCAGCAGTGGGGAGACTGTCTAATCTTGAGTACCTCAATCTGAGCAGTAACTTTAGTGACATGAAAGAACTCCCCGAGTCGTTTGGTGATCTAATCAATCTTAAGGAGCTAGATCTCAGTAATAACCAAATTCATGCGCTCCCTGATTCATTTGGTCGCCTTGAGAATCTGGTGAAGCTAAATCTGGAGCAAAATCCTCTTGTCGTGCCTCCGCAGGAGATTGTAAAGCAAGGGACTGAAGCTGTGAAGTCTTTCATGACACAACGGTGGCATGATATACTGTTTGAGGAAGAGAGGAGAAAGAATCTGGAATTAGAAGATCACGGAAAAAATGGATGGCTTAGTCGTAGCACTTCCTGGTTGAAAAGTTATGCCAACGGTTTTTCTGAATATTTTGTATCTAATTCCCCGAGAGATCCTTATCTGGATCGGCAACTATAA | 1545 | 0.4673 | MDPNPNRFPILSYVMARLPSFAPKIPNSHSEDDHDIEQPSPALSRKRIDSSTDHEIETQMPQLTDPILLEAMKRAISEVAETRSVLRVLGERPDHETVDRAKMKLAEIDADLSGQLDEVALSPGSVDIEGSQWRDVSLSETNKGVEKEKQAYQAIISLDEMHEAYEKLLKDAEQRLAKIYESAGGTVPEEEMPEKEEEVNEEVVGILQEAFGKGLERIDLSDRRLRYMPEAFGRIRSLAVLNVSSNQLKVIPDSVAGLENLEELNVSSNVLQSLPDSIGLMQKLKSLNISGNKLAALPDTICHCRSLVALDASYNYLSYLPTNLGLELSKLQNLSVHCNKLRSFPSSICEMKSLCYLDAHFNELHGLPAAVGRLSNLEYLNLSSNFSDMKELPESFGDLINLKELDLSNNQIHALPDSFGRLENLVKLNLEQNPLVVPPQEIVKQGTEAVKSFMTQRWHDILFEEERRKNLELEDHGKNGWLSRSTSWLKSYANGFSEYFVSNSPRDPYLDRQL* | 515 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte1g01973 | 514 | SUPERFAMILY | L domain-like | 213 | 436 | - | - | |
| Pte1g01973 | 514 | SMART | LRR_bac_2 | 281 | 300 | - | - | |
| Pte1g01973 | 514 | SMART | LRR_bac_2 | 328 | 347 | - | - | |
| Pte1g01973 | 514 | SMART | LRR_bac_2 | 304 | 323 | - | - | |
| Pte1g01973 | 514 | SMART | LRR_bac_2 | 237 | 254 | - | - | |
| Pte1g01973 | 514 | SMART | LRR_bac_2 | 351 | 370 | - | - | |
| Pte1g01973 | 514 | SMART | LRR_bac_2 | 374 | 395 | - | - | |
| Pte1g01973 | 514 | SMART | LRR_bac_2 | 399 | 418 | - | - | |
| Pte1g01973 | 514 | SMART | LRR_bac_2 | 258 | 277 | - | - | |
| Pte1g01973 | 514 | SMART | LRR_typ_2 | 422 | 445 | IPR003591 | - | |
| Pte1g01973 | 514 | SMART | LRR_typ_2 | 399 | 421 | IPR003591 | - | |
| Pte1g01973 | 514 | SMART | LRR_typ_2 | 328 | 351 | IPR003591 | - | |
| Pte1g01973 | 514 | SMART | LRR_typ_2 | 374 | 398 | IPR003591 | - | |
| Pte1g01973 | 514 | SMART | LRR_typ_2 | 258 | 280 | IPR003591 | - | |
| Pte1g01973 | 514 | SMART | LRR_typ_2 | 235 | 257 | IPR003591 | - | |
| Pte1g01973 | 514 | SMART | LRR_typ_2 | 281 | 304 | IPR003591 | - | |
| Pte1g01973 | 514 | FunFam | Plant intracellular Ras-group-related LRR protein 2 | 323 | 496 | - | - | |
| Pte1g01973 | 514 | FunFam | Plant intracellular Ras-group-related LRR protein 9 | 139 | 319 | - | - | |
| Pte1g01973 | 514 | ProSiteProfiles | Leucine-rich repeat profile. | 260 | 281 | IPR001611 | GO:0005515 | |
| Pte1g01973 | 514 | Pfam | Leucine rich repeat | 393 | 435 | IPR001611 | GO:0005515 | |
| Pte1g01973 | 514 | Pfam | Leucine rich repeat | 260 | 317 | IPR001611 | GO:0005515 | |
| Pte1g01973 | 514 | Pfam | Leucine rich repeat | 330 | 385 | IPR001611 | GO:0005515 | |
| Pte1g01973 | 514 | MobiDBLite | consensus disorder prediction | 27 | 54 | - | - | |
| Pte1g01973 | 514 | ProSiteProfiles | Leucine-rich repeat profile. | 401 | 422 | IPR001611 | GO:0005515 | |
| Pte1g01973 | 514 | Coils | Coil | 155 | 182 | - | - | |
| Pte1g01973 | 514 | Gene3D | Ribonuclease Inhibitor | 128 | 327 | IPR032675 | - | |
| Pte1g01973 | 514 | Gene3D | Ribonuclease Inhibitor | 328 | 456 | IPR032675 | - | |
| Pte1g01973 | 514 | PANTHER | - | 214 | 388 | - | - | |
| Pte1g01973 | 514 | MobiDBLite | consensus disorder prediction | 22 | 54 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte1g01973 | Pte-Chr1 | 40991491 | 40994065 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte1g01973 | 218 | 452 | Receptor kinase-like Gene Family | AT5G07280 | 31.148 | 4.44e-12 | 67.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte1g01973 | - | - | qsa:O6P43_022659 | 652.514 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pte1g01973 | 1 | 40991491 | 40994065 | Pte1g01973 | 1 | 40991491 | 40994065 | RCT |