Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01972 ATGAAGTTAAACGTGTATGTGTTAGAGGCGAAGGACATACCGGAAAACGTAAGAGACTCATATGTGAAGCTTGAAGTTGGGAAGCATAAGTGTAAGACGACTAAGGTCTCAAGGCTGCACAGTGGTGGCAATCCAGTTTGGAACGAAGAGTTTGCTTTCAAGGTGCACGTTGACAAGAAACATGCTGAAAAGCTTGTTTTGTCTGTGTTCAACCACAATGCTCAATCGAAAGTCCGCCATGGCTGTGAGGATTCTTTGTTGGGTCAGGTTCGGATTCCTATTTTGTCTGTTTCTGCGGCAGATAGTCGAACCTTGCCTCCCACATGGTTTTCTTTAGAGAGTCCCAAGTGTGGCAAGCTGAATCTGGATTGTGGTAAAATTCTTGTCTCTTTATCTCTTCATGGAAAAGCCAACAAGGCAAATCATGCACTACATCCACAGCCAAACATTTCAATTCAGGACCCTGCAGAAGAATGGAAGGGAACATGTGTTTTGGATCATGACATCCGAAGCCCCAAATCTCCCTTACTCAAGGCTGATGGGATACATTTCGTGAAAACCTTTGCCAATCGAGTCGAAAGACTTTTTTGTAAAAATGACGAAGCAAGAAAAACAGAAGACACTTCAGACTTGTCTAGTGCATCATCTAATCCATATGACGATTGCTTGGAAGAAACTCCTCCTGAGTACTATAGCTTTGAGGAAGCCATGAGGATATTGGAGGCAAGAGATGACAAACAAGACATGCCAGAAGATCTGGAAGGAGGAATATTTGTAGACCGAGTTTTCGTTGTCCCACCAAATGTACTTAATGCGGTGCTGTTTTCGCCTGGTTCAGAATTCAGGAGAAACTTGGCAGAAGTAGAGGGGATCGAAATTACGCAGGATGGATCTTGGGCATGGAAAAAAGGAGACAATGAGCCTTGTTTAACAAGAATTGTTTCCTACACAAAAGCTGCTAACAGGTTTGTCAAGGCTATTAAGGCCATTGAGGAACAAACCTATATCAAAGCTAATGGAAATGAATATGCTGTACTTCTTACTGTGAGTACGCCTGAAGTCCCATTTGGAAACGCATTCAAGCTCCAATTGCTTTACAAGATACTGCATGGGACTGAGCTATCTTCCGGAGAAGAATCGTCTCGTCTTGTAGTATCATGGGGCTTGATCTTCCTGCATAGCACAATGATGAAAGGAATGATCGAAGAAGGATGCCGTAGAGGAATGGGCCAAAGTTTTCGACTATTATCTGACATGCTTGCACAGAATTACAGGTTAATAGATTCGGAAAATTTATCTGACAAGGAACAAAAGCTAGCAACTTTGCAAACAGAACAAAAGTCAGACTGGAAATTAGCGGTTGAGTACTTTTTGAACTTGACTGCAGTTTCAACGATATTTATGGTTTTGTATGTCTTGGTACATATTTCACTCTGTGAACCAAGTAAGTTTCAAGGCTTAGAGTTTGGAGGACTTGATTTGCCGGACAATTTTGGAGAGCTCATTACATGTGGAGTTCTAGTAATGCAGTTAGGCCGAGTTTATAACATGGTATCGCATTTCATCCAAGCTAGGCTGAGAAGGGGATGTGGTCATGGAGATAAACCCCAAGGCAATGGATGGGTTCTGACTGTGGCTTTGATTGAAGGGATCAACTTAACATCCCTGGATTCAAAGGTGTTATTAGATCCCTATGTGGTTTTAACATGCAATGGTAAAACGAGATCAAGTTCTGTCAAACTTCAAACTCAAGATCCTAAATGGAATGAAATACTGGAATTTGATTCTATGGAAGAACCACCATCCGTATTGGCTTTGGAAGTGTTCAGTTTTGATGGCTTATTTGATCCGGCAGCCTCACTTGGACATGCTGAGATCAATTTCTTGAAGTACACGTCTATTGAACTAGCAGATTTATGGGTTCCCCTTCAAGGAAAGATTGCTCAATCTTCTCAGTCAAAGTTGCACTTGAGAATATTTTTGGACAGCAGTAAAGGGGTTGAAACAATTAGGGAGTATTTGACTAAGATGGAGAAAGAAGTTGGCAAAAAGTTGAGTGTGAAATCTCCCCACAGGAATTCTAGTTTCCGGAAACTGTTTGGGCTGCCACAAGATGAATTTCTTATCAGCGATTTCAGTTGTTATCTGAGAAGAAAGATGCCTCTACAGGGCAGGCTCTTCCTTTCGGCAAGGATAGTGGGATTTTATGGGAACTTTTTGGGACACAAGACTAAATTTTTCTTCCTCTGGGAGGATATTGAAGATATTCAAGTCCTGCCTCCTTCAATCATGTCAGTTGGTAGTCCTACACTGCTCATGATTCTTCGAAAGGGTCGAGGTCTCGATGCAAGGGATGGAGCAAAGTCTCAAGATGATGAAGGAAGGCTTAAGTTTCATTTTCACTCATTTGTGTCATTTCATAATGCCAGCAGAACTATAATGGCCTTATGGAGAACAAGACCAGTTTCCCATGATCGAAAAAGCGCAGAAGAACTTGATGACTCGGACGACAGCTTTATTGTTCCTGAAGACTCCCTATCCTACCTCGACAATGAAGATATACAGATGACTAAGGTCTACTGCGCAGAACTTCCCATTCATATGGAATCAATAATGGAATTGTTCAGTGGTGGGAAGATGGAGAAAAAAATTATGGAAAAATCAGGATGTGTTCATTACGCTACAACTAGTTGGGAATCTGTGGCGTCGGGTGGTTTTGAACGAGGAGTGTCTTACCAATTCAATGGTCACGTATCGGTTTTTGGAGACGTGACATGCATACAGAAGAAGTTGGCAAAAGAAAATGGTGAAGGTTGGATTGTGAACGAGGTCATGACCCTCCATGGCGTTCCATTTGGCAACCATTTTCGAGTTCGTTTGAGGTATGAAATGGAGAACGCTGGACATGGCGGTTGTAAATGCAATGTTTACATTGGGATGATCTGGTTCAAAGCCTGCAAGTTACAGCAGAGGATGAACCAGCGCATAATGGAGAAATTTACCAAGAGACTCGAGGAATTATTTGAACTGGTCGAAAGGGATTTTGTCATTACTGCTGCTGGTTAG 3066 0.4207 MKLNVYVLEAKDIPENVRDSYVKLEVGKHKCKTTKVSRLHSGGNPVWNEEFAFKVHVDKKHAEKLVLSVFNHNAQSKVRHGCEDSLLGQVRIPILSVSAADSRTLPPTWFSLESPKCGKLNLDCGKILVSLSLHGKANKANHALHPQPNISIQDPAEEWKGTCVLDHDIRSPKSPLLKADGIHFVKTFANRVERLFCKNDEARKTEDTSDLSSASSNPYDDCLEETPPEYYSFEEAMRILEARDDKQDMPEDLEGGIFVDRVFVVPPNVLNAVLFSPGSEFRRNLAEVEGIEITQDGSWAWKKGDNEPCLTRIVSYTKAANRFVKAIKAIEEQTYIKANGNEYAVLLTVSTPEVPFGNAFKLQLLYKILHGTELSSGEESSRLVVSWGLIFLHSTMMKGMIEEGCRRGMGQSFRLLSDMLAQNYRLIDSENLSDKEQKLATLQTEQKSDWKLAVEYFLNLTAVSTIFMVLYVLVHISLCEPSKFQGLEFGGLDLPDNFGELITCGVLVMQLGRVYNMVSHFIQARLRRGCGHGDKPQGNGWVLTVALIEGINLTSLDSKVLLDPYVVLTCNGKTRSSSVKLQTQDPKWNEILEFDSMEEPPSVLALEVFSFDGLFDPAASLGHAEINFLKYTSIELADLWVPLQGKIAQSSQSKLHLRIFLDSSKGVETIREYLTKMEKEVGKKLSVKSPHRNSSFRKLFGLPQDEFLISDFSCYLRRKMPLQGRLFLSARIVGFYGNFLGHKTKFFFLWEDIEDIQVLPPSIMSVGSPTLLMILRKGRGLDARDGAKSQDDEGRLKFHFHSFVSFHNASRTIMALWRTRPVSHDRKSAEELDDSDDSFIVPEDSLSYLDNEDIQMTKVYCAELPIHMESIMELFSGGKMEKKIMEKSGCVHYATTSWESVASGGFERGVSYQFNGHVSVFGDVTCIQKKLAKENGEGWIVNEVMTLHGVPFGNHFRVRLRYEMENAGHGGCKCNVYIGMIWFKACKLQQRMNQRIMEKFTKRLEELFELVERDFVITAAG* 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01972 1021 ProSiteProfiles C2 domain profile. 522 641 IPR000008 -
Pte1g01972 1021 ProSiteProfiles VASt domain profile. 254 428 IPR031968 -
Pte1g01972 1021 Pfam GRAM domain 695 762 IPR004182 -
Pte1g01972 1021 SMART gram2001c 694 760 IPR004182 -
Pte1g01972 1021 Pfam VAD1 Analog of StAR-related lipid transfer domain 860 990 IPR031968 -
Pte1g01972 1021 Pfam VAD1 Analog of StAR-related lipid transfer domain 258 407 IPR031968 -
Pte1g01972 1021 ProSiteProfiles VASt domain profile. 855 1015 IPR031968 -
Pte1g01972 1021 Gene3D C2 domain 533 661 IPR035892 -
Pte1g01972 1021 ProSiteProfiles C2 domain profile. 1 110 IPR000008 -
Pte1g01972 1021 Gene3D C2 domain 1 158 IPR035892 -
Pte1g01972 1021 SMART C2_3c 542 640 IPR000008 -
Pte1g01972 1021 SMART C2_3c 2 106 IPR000008 -
Pte1g01972 1021 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 143 IPR035892 -
Pte1g01972 1021 CDD C2 543 643 - -
Pte1g01972 1021 CDD C2 3 112 - -
Pte1g01972 1021 Pfam C2 domain 2 112 IPR000008 -
Pte1g01972 1021 Pfam C2 domain 542 643 IPR000008 -
Pte1g01972 1021 Gene3D - 692 819 IPR011993 -
Pte1g01972 1021 PANTHER BNAA05G37250D PROTEIN 1 1015 IPR044511 -
Pte1g01972 1021 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 541 663 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01972 Pte-Chr1 40985594 40991100 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01972 3 135 Lipid Metabolism Gene Families AT3G61300 29.286 7.69e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01972 - - qsa:O6P43_022660 1271.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g01972 1 40985594 40991100 Pte1g01972 1 40985594 40991100 RCT