Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte1g01964 ATGAAGGGAACTCTACGATACTTGGCAGGAATTGCAGGCCCTAGTGGTTATGGCTCCAATTCTACCGCTGAGCAAGTCACCAGAGATCGTTCATGCTTGGTTAATTCCCATCTAACTGTTATAATCACAGGGGCTACATCCGGGATCGGAGCTGAGACAGCTAGAGTACTGGCAAAGAGAGGCTTGAGAGTTGTGATTGCTGCAAGAGACTTGAAGAAGGCAAGGAAAGTGAAAGAGAGCATAAACAAAGAGAACCCAAATGCTGAGGTTATTGTGATGGAGATTGATCTCAGCTCCTTTGCTTCCATACAAAGATTTTGTTCAGAGTTTTTAGCTTTAGAATTGCCCCTTAATATTCTTATAAATAATGCGGGAATATACTCTGGTAATTTAGAATTCTCCGAAGATAAAATTGAGATGACATTTGCAACAAATTATTTAGGACACTTTTATTTGACAGAGATGCTCACAGAAAAGATGTTGCAAACAGCAAATGAGATAGGCATCCATGGAAGAATAATCAATGTTTCTTCTATGGTTCATAGCTGGGTTAAAAGGGACAAGTTTTGCTTCCATGACATGCTGAACGGAAACAATTACAATGGGACGCGTGCTTACGCTCAATCAAAACTAGCCAGCATTTTGCATGCGAAGGAAATGGCAAGACAATTAAAGGCAAGAAATGCAAGAGTGACTATCCATGCAGTTCATCCTGGTGTTGTGAAGACCGGAATCATCAAGGGCTTAATCACTGACTCTCTGTTTTTCATGGCATCCAAATTTCTCAAGTCAACCGCCCAGGCTGCGTCGACAACATGTTACGTTGCCCTGAGCTCACAACTGGAAGGGGTTAGTGGAAAGTACTACGCAGATTGTAACGAGAGTACCTGCTCAAGTTTAGCTAGTGATGAATCTGAAGCTCAGAAGTTGTGGAACAATACTCGTGCACTAATTAACAAACACGTAAAACGCCAAGCAGCACTTTAA 987 0.4184 MKGTLRYLAGIAGPSGYGSNSTAEQVTRDRSCLVNSHLTVIITGATSGIGAETARVLAKRGLRVVIAARDLKKARKVKESINKENPNAEVIVMEIDLSSFASIQRFCSEFLALELPLNILINNAGIYSGNLEFSEDKIEMTFATNYLGHFYLTEMLTEKMLQTANEIGIHGRIINVSSMVHSWVKRDKFCFHDMLNGNNYNGTRAYAQSKLASILHAKEMARQLKARNARVTIHAVHPGVVKTGIIKGLITDSLFFMASKFLKSTAQAASTTCYVALSSQLEGVSGKYYADCNESTCSSLASDESEAQKLWNNTRALINKHVKRQAAL* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte1g01964 328 Gene3D - 35 323 - -
Pte1g01964 328 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Pte1g01964 328 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Pte1g01964 328 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Pte1g01964 328 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 39 296 IPR036291 -
Pte1g01964 328 Pfam short chain dehydrogenase 39 180 IPR002347 -
Pte1g01964 328 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Pte1g01964 328 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Pte1g01964 328 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Pte1g01964 328 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Pte1g01964 328 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Pte1g01964 328 CDD retinol-DH_like_SDR_c_like 39 311 - -
Pte1g01964 328 PANTHER RETINOL DEHYDROGENASE 14 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte1g01964 Pte-Chr1 40933549 40937882 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte1g01964 39 250 Acyl Lipid Metabolism Gene Families AT3G55290 31.797 1.45e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte1g01964 - - pcin:129309518 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte1g01964 1 40933549 40937882 Pte1g01964 1 40933549 40937882 RCT