Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g01209 ATGTCACTCTCAATTTCAATCTCAGGCATGGAAGATGAGTGCTGCTCTACTCAACTCATTGATGGAAACGGCGAGTTCAATGTTGCAGGGCTTGAGCATTTCATGCAGAAAGTGAAGCTCGCTGAGTGTGGGCTTAACTATGCTGTCGTAGCCATAATGGGTCCTCAAAGTAGTGGGAAGAGCACTCTCATGAATTATCTATTCCATACCAACTTCAGAGAGATGGACGCATACAGGGGGAGGTCTCAGACAACAAAAGGAATTTGGATAGGCAAATGTCTGGGAATTGAGCCATGTACTATTGCGATGGATTTGGAAGGTACTGATGGAAGAGAAAGGGGTGAGGACGACACTGCTTTTGAAAAACAAAGTGCTCTTTTTGCATTAGCTATTTCTGACGTTGTACTCATAAACATTTGGTGCCATGATATTGGTCGAGAACAAGCTGCCAACAAGCCTCTTTTGAAGACAGTTTTTCAGGCTATGATGAGAATGTTTAGTCCTCGCAGAGCAACATTACTGTTTGTCATACGTGATAAAACAAAGACTCCACTTGAACGCCTAGAGCCCATTTTAAGAGAAGATATCCAAAAAATATGGGATGCACTTCGTAAGCCTGAAGTCCGTAAACACACTCCACTCAGTGACTTCTTTAATGTGGAGGTTACTGCTTTATCCAGTTATGAGGAGAAAGAAGAGAAGTTTAAGGGAGAGGTCGATCAACTGAGGCAGCGATTCCAAAATTCTATATCCCCAGGGGGCATTGCTGGTGATAGGCGAGCTGTAGTTCCTGCTTCAGGATTTTCTCTCAGTGCGCAACAGATATGGAAAATTATAAAAGAGAACAGGGACCTCGATCTTCCTGCTCACAAGGTGATGGTTGCCACTGTACGGTGTGAACAAATTGCAAATGAGAAGCTTAGGCGCTTGACCTCTGACGAGGATTTGTTGGAGTTGGAGCAAGCTGTACAAATAGGTCCTGTACAAAGTTTTGGGAAAAAGCTTAGTGCAGTTTTAGATACATACCTTTCAGAATATGAGATGGAGGCAGTGTACTTTGATGAAGGTGTGAGGAATGCAAAACGACAACAGATGTTGACAAAATCACTGGAGTTGACATATCCTGCATATACCACCTTGTTGGGACATCTGCGTGCTAAAGCTCTTGAAAATTTCAAATCTAGGCTGGACAAGTCTCTAAAGAGTGGAGAAGGTTTTTCTGCATCTGTGCGTACTTGCTCCAAAACTTGCCTTGTTGAGTTTGATGAACAATGTGCTGATGCCGCAGTACGACAAGCTAACTGGGATGCATCAAAAGTAAGAGAGAAACTTTCTCGTGATATAGAGACACATGCATCATCTGTATGCTCTGCAAAGTTGTCTGAGATAACTACCATGTTTGAGAAACAACTTGCCAATGCCTTGACTGGACCTGTAGAATCCTTGTTTGAAGCAGCAGGGAAGGATACCTGGGCTTCAATAAGGAGGCTTCTTAAACATGATACTGAAGCTGCACTGTCAGAATTTTCAAGAGTCATTGCAGGCTTTGATCTGGACCAAGAAATTGTTGATACACTGCGAAGGAAACTACAAGTATATGCAAGAAAATTGGTTGAAAATAAAGCGAGAGAAGAAGTTGGCAAGGTTCTTATCCACATGAAAGATAGGTTCTTGACGGTGTTCAATCATGACAGTGATTCACTCCCTAGAGTTTGGACTGGGAAGGAAGATATCAGAGCTGTCACAAAGGATGCATGCTCAGCGGCTTTGAAGCTTTTGTCTGACTTGGCTGCCATACGCTTGGATGAGAAACCTGATAACATTGAAAACATACTTCATTCTTCTCTATTGGACGGGACTGTAACTGTTTCATCTTCGCATGGTAGAAGTGAAGAATCATCTATAGATCCTCTCGCCTCTAGTGCATGGGAGGAGGTTTCACCGAAGGATACTCTCATCACACCAATGCAATGCAAGTCTTTGTGGAGACAGTTTAAAGCTGAAACTGAATATTTTGTTACTCAAGCTATTTCAGCACAGGAGGCTTACAAGCAGAGTAATAGCTGGCTTCCTCCTCCATGGGCAATAGTGGCAATGATAGTTCTAGGTTTTAATGAATTTATGCTTTTACTGAGGAATCCGCTTTACCTATTGGTGATATTTGTTGCATATTTATTTCTTAAGGCATTATGGGTGCAGATGGACATGGATGGGCAGTTTCGTTATGGCACTCTTCCTGGACTGATTGCTATATCATCGAAGTTTCTTCCCACCATCATGAACCTTCTTCGTCGTCTTGCTGAAGAAGCTGGGTTTAGGTCAGCAGAAGTCCCACAGCAACATTCCACCATTTATCACAGGAATCAGACTCCGGAGCCTAATTCACTATCAAGATCGGTTCCAGAGTCATCAATATCATCTACTGGATTATCCTCGCACACCGATGATGATCACACTTCAAATTTGAGGCATAGATGCAATATTAGTGGTGAAGCTGCTGAATTTTCATGA 2511 0.4265 MSLSISISGMEDECCSTQLIDGNGEFNVAGLEHFMQKVKLAECGLNYAVVAIMGPQSSGKSTLMNYLFHTNFREMDAYRGRSQTTKGIWIGKCLGIEPCTIAMDLEGTDGRERGEDDTAFEKQSALFALAISDVVLINIWCHDIGREQAANKPLLKTVFQAMMRMFSPRRATLLFVIRDKTKTPLERLEPILREDIQKIWDALRKPEVRKHTPLSDFFNVEVTALSSYEEKEEKFKGEVDQLRQRFQNSISPGGIAGDRRAVVPASGFSLSAQQIWKIIKENRDLDLPAHKVMVATVRCEQIANEKLRRLTSDEDLLELEQAVQIGPVQSFGKKLSAVLDTYLSEYEMEAVYFDEGVRNAKRQQMLTKSLELTYPAYTTLLGHLRAKALENFKSRLDKSLKSGEGFSASVRTCSKTCLVEFDEQCADAAVRQANWDASKVREKLSRDIETHASSVCSAKLSEITTMFEKQLANALTGPVESLFEAAGKDTWASIRRLLKHDTEAALSEFSRVIAGFDLDQEIVDTLRRKLQVYARKLVENKAREEVGKVLIHMKDRFLTVFNHDSDSLPRVWTGKEDIRAVTKDACSAALKLLSDLAAIRLDEKPDNIENILHSSLLDGTVTVSSSHGRSEESSIDPLASSAWEEVSPKDTLITPMQCKSLWRQFKAETEYFVTQAISAQEAYKQSNSWLPPPWAIVAMIVLGFNEFMLLLRNPLYLLVIFVAYLFLKALWVQMDMDGQFRYGTLPGLIAISSKFLPTIMNLLRRLAEEAGFRSAEVPQQHSTIYHRNQTPEPNSLSRSVPESSISSTGLSSHTDDDHTSNLRHRCNISGEAAEFS* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g01209 836 Pfam Sey1 three-helix bundle domain 330 769 IPR046758 -
Pte19g01209 836 Hamap Protein SEY1 [SEY1]. 16 771 IPR008803 -
Pte19g01209 836 MobiDBLite consensus disorder prediction 777 823 - -
Pte19g01209 836 Gene3D - 18 252 IPR027417 -
Pte19g01209 836 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 53 288 - -
Pte19g01209 836 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 252 IPR027417 -
Pte19g01209 836 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 44 259 IPR030386 GO:0005525
Pte19g01209 836 PANTHER PROTEIN SEY1 10 781 IPR008803 -
Pte19g01209 836 FunFam Protein ROOT HAIR DEFECTIVE 3 homolog 25 280 - -
Pte19g01209 836 MobiDBLite consensus disorder prediction 777 815 - -
Pte19g01209 836 Coils Coil 225 245 - -
Pte19g01209 836 CDD GBP 43 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g01209 Pte-Chr19 21535972 21562375 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g01209 K22698 - gmx:100800151 1196.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g01209 19 21535972 21562375 Pte19g01209 19 21535972 21562375 RCT