Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g01054 ATGGATGGTAATAATCAGGATTCTGGGATTCAAGCTGAATCCTTTGATAATTTGGCTTCAAGGATTTCTGAGGTTTCCCTTCATAACAAGGCTTCCTCCGCTTCTCTGGATGATTGGGAGTATGGCAATCAAATTGAGCTTCATGGACGTGATGCACTGCTTGCTTCTAGCATTGGAGACCTAAGAATTGATGGGTCTCCTTTGAATGCTGAATTGCCTGATCGAACAAGGGGAGGAAGTAATAAGAAGATGGAGCACATAAGCCCTGGGCAGAGACGAGGGAAGTACTTTTATTATGATTCTCCACTTTATGAAGATACTGGAGTTTGGATACCAGTTTCAGTCCCACCTATGCCTGAAATTGAGCATGAAGAGTGGGCCAGAGGTTTTATCTCAAATGGAGGCTATTTTCCTGATAGTGAATTGGATTGGAGTCAATACGTCAGTCAAGAAAAGGACATGACCATGTGGGATGTGGTTGTGGAGATGCTAGTTGTGGCCCGTGGAAAAGTTATATCTTTGAATTCAGATGAAATTCAAAGACGTACTTTGTCATGGGTATCAGGCCATTTACTAGAGCAAGCATGGAAAGATATGGCTCAAACTCTTACAGAGGTGAACTATGGGAATGTACAGGAATTAATTGATGCAGAGCCTCCAAAATGGTTGCCTGACAGTGCTGCTTCTTCTTGTATGCTTTGTGGCGTGAGGTTTCATCCAATCATGTGTTGCCGGCATCATTGCCGGTTCTGTGGAGGAATATTTTGTGGTGACTGCTCCAAAGGAAGGAGTCTGTTGCCAGTGAAATATCGTGTGTCTGACCCACAAAGATGCTGTGATGTGTGCTTTGTGCGGCTTCAGTCTGTGCAACCTTATCTGATGGACCAAGTGAGCAATGCTGCTCAATTACCAACTCATGACTTGACAGACCTGAGTACACTGCGATCTTGGGTTAATTTTCCATGGGGGCAGTCTATGGAGTATGAAATATATAAGGCAACTAACACTATTAAGGCGTATAATAAGTTAGGTTCCTTGAAACCTGAAAAGTTAATTCCCGAAGCTATTCTTCAACAAGCAAAAGGCCTTGCAATAATTACAGTGGTAAAAGTAGGAATGGTGATTACCTACAATATTGGAACGGGTCTAGTGATTGCACGTAAGGAGGATGGATCTTGGTCTCCACCATCTGCCATTTCTACATTTGGTGTTGGATGGGGCGCTCAGGCAGGAGGAGAATTAACTGATTTCATAATTGTTTTAAGAACAACGGATGCTGTTAAAATGTTCAGTGGGAATTTACATTTTTCACTTGGAGCTGGCTTGAGTGCAGCAGTTGGTGTTATTGGAAGATCTGTTGAGGCTGATGTTCGAGCTGGTGATGGTGGTTATGCTGCTTGTTACACATACAGCTACAGTAAAGGTGCATTTGTTGGATGTTCACTTGAAGGAAGTGTTGTCACCACCAGAGCGCAGGAAAACTCTCGTTTCTATGGCAGTCAATCTATAACTGCATCAGATATACTTCTTGGCTCATTGCCCAAGCCACGGGCAGCTGCCATTCTTTATCGTGCTCTTTCAGACCTGTATCAAAAACTGGAAGGATAA 1608 0.4322 MDGNNQDSGIQAESFDNLASRISEVSLHNKASSASLDDWEYGNQIELHGRDALLASSIGDLRIDGSPLNAELPDRTRGGSNKKMEHISPGQRRGKYFYYDSPLYEDTGVWIPVSVPPMPEIEHEEWARGFISNGGYFPDSELDWSQYVSQEKDMTMWDVVVEMLVVARGKVISLNSDEIQRRTLSWVSGHLLEQAWKDMAQTLTEVNYGNVQELIDAEPPKWLPDSAASSCMLCGVRFHPIMCCRHHCRFCGGIFCGDCSKGRSLLPVKYRVSDPQRCCDVCFVRLQSVQPYLMDQVSNAAQLPTHDLTDLSTLRSWVNFPWGQSMEYEIYKATNTIKAYNKLGSLKPEKLIPEAILQQAKGLAIITVVKVGMVITYNIGTGLVIARKEDGSWSPPSAISTFGVGWGAQAGGELTDFIIVLRTTDAVKMFSGNLHFSLGAGLSAAVGVIGRSVEADVRAGDGGYAACYTYSYSKGAFVGCSLEGSVVTTRAQENSRFYGSQSITASDILLGSLPKPRAAAILYRALSDLYQKLEG* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g01054 535 Pfam Las17-binding protein actin regulator 403 527 IPR007461 -
Pte19g01054 535 SMART fyve_4 217 288 IPR000306 GO:0046872
Pte19g01054 535 Pfam FYVE zinc finger 221 287 IPR000306 GO:0046872
Pte19g01054 535 MobiDBLite consensus disorder prediction 65 88 - -
Pte19g01054 535 FunFam Zinc finger family protein 211 293 - -
Pte19g01054 535 PANTHER SH3YL1 PROTEIN 186 534 - -
Pte19g01054 535 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 298 IPR013083 -
Pte19g01054 535 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 225 287 IPR017455 -
Pte19g01054 535 CDD SYLF_FYVE 328 529 - -
Pte19g01054 535 SUPERFAMILY FYVE/PHD zinc finger 196 286 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g01054 Pte-Chr19 10290115 10294217 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g01054 222 283 EF-hand Containing Proteins AT3G14270 34.328 3.08e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g01054 K20523 - qsa:O6P43_012835 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g01054 19 10290115 10294217 Pte19g01054 19 10290115 10294217 RCT