LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte19g00859	ATGAAGATGAACCCACTTGTCTCAATTCTTCATCTTTATGATGTTGTCAATACTCCTGGTGTCACAGCTGATATAAGTCACATGGACACCAGTGCTGTGGTGCGTGGTTTTCTGGGTCAGCCACAACTTGAGAGTGCACTTACAGGCATGGACTTGGTAATCATACCTGCAGGGGTGCCAAGGAAGCCTGGAATGACTAGGGATGATCTGTTTAACATCAACGCTGGAATTGTTAGGACCCTATGTGAAGGAATTGCCAAGTGCTGCCCTAATGCAATTGTCAACTTAATCAGCAATCCAGTGAATTCCACTGTTGCAATTGCAGCTGAAGTTTTCAAAAAAGCTGGCACATATGATCCGAAGAAACTCTTGGGTGTTACGACTCTTGATGTTGTGAGGGCAAACACATTTGTGGCAGAAATTCTAGGACTTGATCCGAGAGAGGTTGAAGTCCCTGTTGTGGGGGGTCATGCAGGTGTCACAATATTGCCTCTTTTGTCTCAGGTTAAGCCTCCTTCTTCATTCACCCCAGAAGAAGTAAAATACCTGACAAATCGTATTCAAAATGGCGGAACAGAAGTTGTTGAGGCAAAAGCTGGAGCTGGATCTGCAACACTGTCAATGGCATATGCAGCTGCCAAGTTCGCAGGGCAATGCCTGCGTGGCTTGAGAGGAGATGCTGGGGTGGTGGAGTGCGCCTTTGTTGCCTCTGAGGTTACGGAACTTCCTTTTTTCGCAACCAAGGTAAGACTTGGTCGAACGGGTGCTGAGGAGATCTACCAACTAGGACCTCTGAAGGAGTATGAAAGGATCGGACTAGTGAAAGCTAAGAAAGAGTTGGCAGAAAGCATTCAGAAGGGAATCAGTTTTATCAGGAAATGA	882	0.4626	MKMNPLVSILHLYDVVNTPGVTADISHMDTSAVVRGFLGQPQLESALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVAIAAEVFKKAGTYDPKKLLGVTTLDVVRANTFVAEILGLDPREVEVPVVGGHAGVTILPLLSQVKPPSSFTPEEVKYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFAGQCLRGLRGDAGVVECAFVASEVTELPFFATKVRLGRTGAEEIYQLGPLKEYERIGLVKAKKELAESIQKGISFIRK*	294

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte19g00859	293	FunFam	Malate dehydrogenase	1	126	-	-
	Pte19g00859	293	Gene3D	-	1	126	-	-
	Pte19g00859	293	Pfam	lactate/malate dehydrogenase, NAD binding domain	1	125	IPR001236	GO:0016491
	Pte19g00859	293	SUPERFAMILY	LDH C-terminal domain-like	126	291	IPR015955	GO:0003824\|GO:0016616
	Pte19g00859	293	NCBIfam	malate dehydrogenase	2	292	IPR010097	GO:0006099\|GO:0030060
	Pte19g00859	293	CDD	MDH_glyoxysomal_mitochondrial	1	291	IPR010097	GO:0006099\|GO:0030060
	Pte19g00859	293	Pfam	lactate/malate dehydrogenase, alpha/beta C-terminal domain	127	290	IPR022383	GO:0016616
	Pte19g00859	293	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	2	125	IPR036291	-
	Pte19g00859	293	PANTHER	MALATE AND LACTATE DEHYDROGENASE	1	292	-	-
	Pte19g00859	293	ProSitePatterns	Malate dehydrogenase active site signature.	126	138	IPR001252	GO:0006108\|GO:0016615
	Pte19g00859	293	Gene3D	-	127	293	IPR015955	GO:0003824\|GO:0016616
	Pte19g00859	293	FunFam	Malate dehydrogenase	127	293	-	-
	Pte19g00859	293	PIRSF	Lac_mal_DH	2	291	IPR001557	GO:0016616\|GO:0019752

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte19g00859	Pte-Chr19	7093244	7096306	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte19g00859	K00026		-	vvi:100232924	535.798

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pte19g00859	19	7093244	7096306	Pte19g00859	19	7093244	7096306	RCT