Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00827 ATGGATGAAGAGTATGATGTGATTGTTCTCGGGACTGGTCTAAAAGAATGCATCATTAGTGGTCTCCTTTCTGTTGACGGCCTTAAAGTACTGCATATGGACAGAAATGACTATTATGGAGGAGAGTCTGCATCTCTTTCTCTTACACAGCTTTGGAAAAGATTCAGGGGAGATGACAAACCTAAAGAGGAACTAGGTTCAAGTAGAGAATATAATGTTGACATGATACCTAAGTTTATGATGGCCAATGGTTCATTTGTTCGTGTTCTCATCCACACAGATGTAACAAAATACCTTCATTTCAAGGCTGTAGATGGTAGCTTTGTGTATAATAAAGGCAAGATACATAAAGTTCCAGCCACAGATGTTGAAGCGCTGAAATCACCATTGATGGGATTGTTTGAGAAGCGTCGTGCTAGAAAATTCTTCATCTATGTTCAAGATTATGACGTGAATGATCCAAAATCTCATGAAGGGCTAGATTTGAGTAAAGTGACTGCCAGAGAGCTGATCTCGAAGTATGGTTTAGAAGATGATACAGTTGACTTTATTGGTCATGCCCTGGCACTTCACTTTGATGATAACTACTTGGATCAGCCTGCTGGAGACTTCGTGCAGAAAATAAAGCTTTATGCAGAGTCCTTGGCACGATTTCAAGCAGGCTCGCCTTACATCTATCCGCTATATGGCCTTGGAGAACTGCCCCAGGCTTTTGCACGTTTAAGTGCTGTCTATGGTGGAACTTACATGCTCAGTAAACCAGAATGCAAGGTAGAATTTGATGGTGAGGGTAAAGCTTGCGGTGTCACTTCAGAAGGAGAAACTGCAAAATGCAAGAAAGTTGTTTGTGATCCATCCTATCTTCCTGAAAAGGTGCAAAAACTGGGAAAGGTTGCACGAGCTATTTGTATCATGAGCCATACAATTCCAGAAACCGATAGTTCTCACTCATGCCAGGTTATTTTGCCACAGAAGCAACTTGGTCGTCACTCTGATATGTACCTCTTCTGTTGCTCTTATGCTCACAATGTGGCACCAAATGGAAAGTACATTGCTTTTGTTTCAGCTGAAGCTGAAACTGACAATCCTGAGGCTGAACTGAAGCCAGGAATCGATCTTCTCGGAGAAGTGGATGAAATATTTTATGACATGTATGACAGATATGTTCCCACAAATGACCCTCAAGCTGATGGTTGCTTCATCTCAACAAGTTTTGATGCATCCACTCACTTTGAGTCCACAGTGGAAGATGTTCTTGCTATGTATACTAAGATCACCGGAAAGACTCTTGATCTATCGGTTGACCTGAGTGCTGCAAGTGCTGCTGGTGCTGCAGAAGAATAA 1344 0.4189 MDEEYDVIVLGTGLKECIISGLLSVDGLKVLHMDRNDYYGGESASLSLTQLWKRFRGDDKPKEELGSSREYNVDMIPKFMMANGSFVRVLIHTDVTKYLHFKAVDGSFVYNKGKIHKVPATDVEALKSPLMGLFEKRRARKFFIYVQDYDVNDPKSHEGLDLSKVTARELISKYGLEDDTVDFIGHALALHFDDNYLDQPAGDFVQKIKLYAESLARFQAGSPYIYPLYGLGELPQAFARLSAVYGGTYMLSKPECKVEFDGEGKACGVTSEGETAKCKKVVCDPSYLPEKVQKLGKVARAICIMSHTIPETDSSHSCQVILPQKQLGRHSDMYLFCCSYAHNVAPNGKYIAFVSAEAETDNPEAELKPGIDLLGEVDEIFYDMYDRYVPTNDPQADGCFISTSFDASTHFESTVEDVLAMYTKITGKTLDLSVDLSAASAAGAAEE* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00827 447 PRINTS Rab GDI protein signature 75 88 IPR000806 GO:0005093|GO:0015031
Pte19g00827 447 PRINTS Rab GDI protein signature 280 294 IPR000806 GO:0005093|GO:0015031
Pte19g00827 447 PRINTS Rab GDI protein signature 348 366 IPR000806 GO:0005093|GO:0015031
Pte19g00827 447 PRINTS Rab GDI protein signature 125 140 IPR000806 GO:0005093|GO:0015031
Pte19g00827 447 PRINTS Rab GDI protein signature 182 196 IPR000806 GO:0005093|GO:0015031
Pte19g00827 447 PRINTS Rab GDI protein signature 323 339 IPR000806 GO:0005093|GO:0015031
Pte19g00827 447 PRINTS Rab GDI protein signature 402 422 IPR000806 GO:0005093|GO:0015031
Pte19g00827 447 PRINTS Rab GDI protein signature 381 400 IPR000806 GO:0005093|GO:0015031
Pte19g00827 447 PRINTS Rab GDI protein signature 16 28 IPR000806 GO:0005093|GO:0015031
Pte19g00827 447 PRINTS Rab GDI/REP protein family signature 24 41 IPR018203 GO:0005092|GO:0007264
Pte19g00827 447 PRINTS Rab GDI/REP protein family signature 6 24 IPR018203 GO:0005092|GO:0007264
Pte19g00827 447 PRINTS Rab GDI/REP protein family signature 86 102 IPR018203 GO:0005092|GO:0007264
Pte19g00827 447 PRINTS Rab GDI/REP protein family signature 135 150 IPR018203 GO:0005092|GO:0007264
Pte19g00827 447 PRINTS Rab GDI/REP protein family signature 212 229 IPR018203 GO:0005092|GO:0007264
Pte19g00827 447 PRINTS Rab GDI/REP protein family signature 69 86 IPR018203 GO:0005092|GO:0007264
Pte19g00827 447 PRINTS Rab GDI/REP protein family signature 230 251 IPR018203 GO:0005092|GO:0007264
Pte19g00827 447 Pfam GDP dissociation inhibitor 1 433 IPR018203 GO:0005092|GO:0007264
Pte19g00827 447 SUPERFAMILY FAD/NAD(P)-binding domain 390 433 IPR036188 -
Pte19g00827 447 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 57 387 - -
Pte19g00827 447 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 118 223 - -
Pte19g00827 447 PANTHER RAB GDP-DISSOCIATION INHIBITOR 1 438 IPR018203 GO:0005092|GO:0007264
Pte19g00827 447 SUPERFAMILY FAD/NAD(P)-binding domain 1 354 IPR036188 -
Pte19g00827 447 Gene3D - 2 430 IPR036188 -
Pte19g00827 447 FunFam Guanosine nucleotide diphosphate dissociation inhibitor 118 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00827 Pte-Chr19 6669827 6673259 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00827 K17255 - tcc:18608208 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g00827 19 6669827 6673259 Pte19g00827 19 6669827 6673259 RCT