Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte18g00497 ATGCAGATGGGGGTTGAACAGGACGACTCTCTTTCTGAAGGTAATGAAAATAAAATAAGTGTTTCTGATGATGATCAATCTACACAAGCTACTATGACAGCAGTTAGGAGTGTTACTATCCCATACATCTATAGGCAAGATATTGTGAGGAGCATGAAACGTGGAATGTTTGGTATTGCCACTGAAGTTCCTGGTGATTCAGATTCAGATAGCAGTGTAACTGATGAAGAAGATGACGGGGAGGAGGAGGATGACAATGACGATGAAGAAGAGGTTGAGGATGATGGTGATAATGAGGATGGAAATGATGATGACAAAAATAAAAGTAACAATGAATCTGATAGGAGCGCTAGTGGTAATTGTAAAAGTGGTCCACTATCAGATCACCAGGTGCGAGTGCTCTGGATGGATGAAACTGAGTCTATTGAAAATATGAATGATGTTGAAGTTATTGATCGTGGGTTTTTACATGGAGATTATGTTGCTGCAGCCTCTGACCCTACTGGACAAGTGGGAGTTGTGGTTGATGTCAATATAACTTGCGATCTAATGGCTCCAAGTGAAGCCATTGTAAAGGATATTTCATCTAAAGACTTGAAACGTGTAAGAGATTTCAATGTGGGTGATTATGTGGTACTCGGTACCTGGTTGGGTAGAGTTGATGATGTTGTAGACAATCTAACAGTCTTGTTCGATGATGGTTCGGTTTGCAAAGTCACAAAAGCTGACCCAATGCATCTTAAACCTATTTCCAAAAATCTTCTTGAAGATGGCCATTTCACTTACTATCCCGGGCAACGTGTGAAGGGTAGTTCCTCATCGGTTTTCAAGTATTCAAGTTGGCTTTCTGGCTTGTGGAAACCAAACAGATTAGAGGGTACGGTCACTAAAGTCACTGTTGGGTCAGTGTTTGTCTACTGGATCGCATCTGCTGGTTATGGGCCTGATTCTTCAACAGCCCCTGCTGAGGAGCAAAGTCCAAAGAACTTAAAGCTGTTATCTTGTTTTGCACATGCAAGCTGGCAATTGGGTGACTGGTGTCTTTTACCTGCATCAGTGAGGTCATCGGCAATATCCTTGGATATGGGGTTGTCAAAATTAGAACTTCATGATTCCATCAACGGTGAATTGGATCCTTCTCAGATGGGAAGTGGGTTTGATTCTGAAGAGGTTGCCCTCGAGGAACTAAATGGCAAGGAAGATGCCATGGACGTTGATCGAACTGATGGATCAGAAGGGAATGGTAAGGAGAAGAAAGCTTCACATGAATCTGGTTCATCTGGCGGCTCACAATCTGTTTCACGTGATTCTATTCGGGACACGTGGCCTCTTCATCGAAAAAAGATACGAAAAGTTGTAATCAGAAGAGACAAGAAAGTAAGGAAGAAAGTAGAAAATTTTGAGAAAGCTCTTATGATTGTCAATACTAGAACAACTGTAGACGTGGCTTGGCAGGATGGAACTATAGAACATGGAGCAGAAGGTACAAAGCTGATTCCTATAGATAACCCTGGTGATCATGAATTTGTTGCTGAACAGTATGTGGTGGAGAAGACCACTGATGATGATGAAATGTCATGTGAATCTAGGCGTGTTGGGGTTGTGCAAAGTGTTAATGCCAAAGATCGGACAGCCTGTGTGAGATGGCTTAAACAAGTTTCAAGAGCTGAAGATCCTCGTGAGTTTGAGAAGGTGGAAGTTGTTAGTGTGTATGAGCTGGAAAGTCATCCGGATTATGATTACTGTTATGGGGATGTGGTTGTTCGCCTGTGTCCTGTATCCCTCTCTTCACAAACAATTCCGGACAGGGATTCTGACCATACAAAGATGCAGATTGGATCTGCTGGGGTAAAACAAGAGTCTGACAATGCAGATGATGAGTCAGGTAATGATGCCGATATGGACTTCTCTGAGCTCTCCTGGGTTGGAAATATTACTGGCCTTAAGAATGGCGATATAGAAGTCACATGGGCAGATGGAATGGTTTCGACGGTTGGTCCGCAAGCAATTTATGTTGTTGGACGAGATGATGATGATGGTGACTCAGTTCCTGCTGGGAGTGAAATTAGCGATGCCGTAAGCTGGGAAACTGTGAATGAGGATGAAAGGAATGTCCTCGAGGACTCAAAAGAGGAAGTCAGGCTGAGCGATTCAACCATCAAAATTCCTGATGCAGAAGATGACATGCAGAGCAACTCTGGTAAAAATGACATTCAATCTGATGGCCTGGAAACTTCTGAGGGAAAAGCAACTTCAGAGGAGTATCATTCTCCAACATCTAGCAGCCTTGATACAGGAGATAAGCAGCAAGATGACAGAAAAATGAAGGATTATGGTGCTGCAGAAGTATCTAAAGTTGGGGAGGCAGCAGAGGTCTTATGCAACTTGAAAACTGAAGAAGGTAATGGATCAGCATGCGAGGAAGATGAGTCAAGCAATTTCAAGAGATTTGATATAGTAAAAGATCCGTCGGACCATTATTTTATTGGTGCAGGTGCACAGAATAATAATAGTAGGAGGTGGCTGAAGAAGGTCCAGCAAGATTGGAGCATACTTCACAATAACCTCCCAGAGGGAGTATATGTCAGGGTTTATGAAGACAGAATGGATCTTCTCAGAGCTGTAATAGTTGGGGCTTATGGAACACCTTACCAAGATGGTCTCTTTTTCTTTGACTTCCACCTTCCTTCAGAGTACCCTGATGCTCCACCATCAGCATACTACCATTCTGGTGGTTGGCGGATAAATCCAAACCTGTATGAGGAAGGCAAGGTTTGTCTTAGCCTTTTAAATACATGGACAGGTAGAGGAAATGAAGTCTGGGATCCTAAATCTTCCAGTATCCTTCAAGTGCTAGTTTCACTCCAGGGACTAGTGCTGAACTCTAAGCCATATTTCAATGAGGCTGGATATGATAAGCATATCGGGACAGCTGAAGGAGAAAAGAATTCGTTGTCATACAACGAGAATGCATACTTGCTTAATTGCAAGACAATGATGTATCTCATGCGGAAGCCCCCCAAGGAGTTTGAGCCGTTGATTAAAGAGCATTTCAAGAGGCGTGGCTATTACATCCTTAAAGCATGTGATGCATACATGAAAGGTTACTTAATTGGTTCATTGACAAAGGACGCCTCTGTTAGTAGCTGCAAAGGTGATCAGGATTCAAATTCTGTTGGATTCAGGCTGATGTTGGGCAAGTTAATGCCAAAGCTTTTCTTGGCGCTGAGTGATGTTGGAGCTGATTGTCACGAATTTCAGCATCTGCAACAATCGTAA 3279 0.4285 MQMGVEQDDSLSEGNENKISVSDDDQSTQATMTAVRSVTIPYIYRQDIVRSMKRGMFGIATEVPGDSDSDSSVTDEEDDGEEEDDNDDEEEVEDDGDNEDGNDDDKNKSNNESDRSASGNCKSGPLSDHQVRVLWMDETESIENMNDVEVIDRGFLHGDYVAAASDPTGQVGVVVDVNITCDLMAPSEAIVKDISSKDLKRVRDFNVGDYVVLGTWLGRVDDVVDNLTVLFDDGSVCKVTKADPMHLKPISKNLLEDGHFTYYPGQRVKGSSSSVFKYSSWLSGLWKPNRLEGTVTKVTVGSVFVYWIASAGYGPDSSTAPAEEQSPKNLKLLSCFAHASWQLGDWCLLPASVRSSAISLDMGLSKLELHDSINGELDPSQMGSGFDSEEVALEELNGKEDAMDVDRTDGSEGNGKEKKASHESGSSGGSQSVSRDSIRDTWPLHRKKIRKVVIRRDKKVRKKVENFEKALMIVNTRTTVDVAWQDGTIEHGAEGTKLIPIDNPGDHEFVAEQYVVEKTTDDDEMSCESRRVGVVQSVNAKDRTACVRWLKQVSRAEDPREFEKVEVVSVYELESHPDYDYCYGDVVVRLCPVSLSSQTIPDRDSDHTKMQIGSAGVKQESDNADDESGNDADMDFSELSWVGNITGLKNGDIEVTWADGMVSTVGPQAIYVVGRDDDDGDSVPAGSEISDAVSWETVNEDERNVLEDSKEEVRLSDSTIKIPDAEDDMQSNSGKNDIQSDGLETSEGKATSEEYHSPTSSSLDTGDKQQDDRKMKDYGAAEVSKVGEAAEVLCNLKTEEGNGSACEEDESSNFKRFDIVKDPSDHYFIGAGAQNNNSRRWLKKVQQDWSILHNNLPEGVYVRVYEDRMDLLRAVIVGAYGTPYQDGLFFFDFHLPSEYPDAPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKHIGTAEGEKNSLSYNENAYLLNCKTMMYLMRKPPKEFEPLIKEHFKRRGYYILKACDAYMKGYLIGSLTKDASVSSCKGDQDSNSVGFRLMLGKLMPKLFLALSDVGADCHEFQHLQQS* 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte18g00497 1092 CDD UBCc 843 991 IPR000608 -
Pte18g00497 1092 MobiDBLite consensus disorder prediction 732 765 - -
Pte18g00497 1092 MobiDBLite consensus disorder prediction 598 630 - -
Pte18g00497 1092 FunFam Probable ubiquitin-conjugating enzyme E2 23 804 1080 - -
Pte18g00497 1092 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 840 1000 IPR000608 -
Pte18g00497 1092 MobiDBLite consensus disorder prediction 60 125 - -
Pte18g00497 1092 MobiDBLite consensus disorder prediction 700 777 - -
Pte18g00497 1092 SUPERFAMILY UBC-like 824 1007 IPR016135 -
Pte18g00497 1092 MobiDBLite consensus disorder prediction 424 438 - -
Pte18g00497 1092 MobiDBLite consensus disorder prediction 1 41 - -
Pte18g00497 1092 Gene3D Ubiquitin Conjugating Enzyme 803 1069 IPR016135 -
Pte18g00497 1092 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 66 1083 - -
Pte18g00497 1092 MobiDBLite consensus disorder prediction 397 423 - -
Pte18g00497 1092 MobiDBLite consensus disorder prediction 69 101 - -
Pte18g00497 1092 MobiDBLite consensus disorder prediction 1 36 - -
Pte18g00497 1092 SMART ubc_7 843 1000 - -
Pte18g00497 1092 Pfam Ubiquitin-conjugating enzyme 845 991 IPR000608 -
Pte18g00497 1092 MobiDBLite consensus disorder prediction 397 440 - -
Pte18g00497 1092 MobiDBLite consensus disorder prediction 700 731 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte18g00497 Pte-Chr18 10716769 10724010 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte18g00497 140 352 Miscellaneous Gene Families AT2G33770 40.187 1.26e-47 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte18g00497 K10581 - cave:132181605 1334.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g00497 18 10716769 10724010 Pte18g00497 18 10716769 10724010 RCT