Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00716 ATGGAATGTGACACATCCTACAAGTCCAACCATAACTCTTCGCCTCAATCGGAACCCCATCAAACAGAGTCAGTCTTTTTTGCTTCGCAACCAAGTCTCCGATCAGGCCCTTCGTTAGGCTCTCCTTTTAGCAACAACTACCACTGCCTTGCCACCCTCAAAAGCCATACCTCATACATATCCTCTCTAGCCTTGGCAGGAAAATTTCTATACACAGGTTCATCTGATAGAGAAATCAGATCTTGGAAACGCATTCCTTTGCATTCTGAATTTGATGAAGAAAATTCTATCGCCAATTCGGTAACTGCTGGAAATGGTGCAGTGAAGTCCTTGGTAATTCATGCTAATAAAGTATTTAGTGCACATCAAGACCACAAAATCCGGGTATGGAAAGTTAGTAACTACGAACCTGATCACCAAAAATATACTCGTGTAGCCACCCTCCCAACACTAGGAGACCGTGCCTTCAAGATGCTGATCCCCAAGAACCATGTGAAAATCAGGAGACACAAAACATGCACATGGGTCCATCATGTTGACGCTGTCTCAGCTCTTGCCTTGTCCAAGGATGAAACTCTACTTTATTCTGTTTCATGGGATCGTACAATCAAAATTTGGCGCACATCAGACTTCACCTGTTTAGAATCAGTTAATAATGCTCATGATGATGCAATAAACACGATTGCTATATCAGAAGACGGACAAGTATATACAGGATCAGCAGACAAGAAAATTAAGGTGTGGAGAAAAGCCCAAGGACAAAAGAAACACTCCCTAATTGACACATTAGAGAAACATAATTCAGGGATTAATGCATTGGCCCTGAGCGATGGCGGTTCCGTACTGTACTCCGGAGCAGGTGACAGATCAATATTGGTCTGGGAGAAAGATAATGATAATGACAGAATGATAGCTGTCAGTTCTCTTCGAGGTCATACTAAGTCCATACTGTGCTTGTTTGTGGTCTCAGATTTAGTTTGCAGTGGTTCTGCAGATAAAACAATAAGGATATGGAGGGGTGTAGATTACAATTACTCGTGTTTGATGGTCTTAGAAGGTCATGGTGGCCCAATTAAGTGCCTTACAGCAGCAATTGATCGTTGTAATAACCAATCCAACACAGCCTTGCTATTGTATAGTGGATGTTTGGACTGTGAACTGAAGGTGTGGCAAATTTCTATCCCTGTACTCTAG 1194 0.4229 MECDTSYKSNHNSSPQSEPHQTESVFFASQPSLRSGPSLGSPFSNNYHCLATLKSHTSYISSLALAGKFLYTGSSDREIRSWKRIPLHSEFDEENSIANSVTAGNGAVKSLVIHANKVFSAHQDHKIRVWKVSNYEPDHQKYTRVATLPTLGDRAFKMLIPKNHVKIRRHKTCTWVHHVDAVSALALSKDETLLYSVSWDRTIKIWRTSDFTCLESVNNAHDDAINTIAISEDGQVYTGSADKKIKVWRKAQGQKKHSLIDTLEKHNSGINALALSDGGSVLYSGAGDRSILVWEKDNDNDRMIAVSSLRGHTKSILCLFVVSDLVCSGSADKTIRIWRGVDYNYSCLMVLEGHGGPIKCLTAAIDRCNNQSNTALLLYSGCLDCELKVWQISIPVL* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00716 397 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 175 206 - -
Pte17g00716 397 ProSiteProfiles Trp-Asp (WD) repeats profile. 175 216 IPR001680 GO:0005515
Pte17g00716 397 ProSiteProfiles Trp-Asp (WD) repeats profile. 309 338 IPR001680 GO:0005515
Pte17g00716 397 CDD WD40 49 391 - -
Pte17g00716 397 FunFam BnaA09g28200D protein 165 253 - -
Pte17g00716 397 Gene3D - 164 395 IPR015943 GO:0005515
Pte17g00716 397 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 295 - -
Pte17g00716 397 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 309 338 - -
Pte17g00716 397 MobiDBLite consensus disorder prediction 1 24 - -
Pte17g00716 397 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 83 IPR001680 GO:0005515
Pte17g00716 397 Gene3D - 32 163 IPR015943 GO:0005515
Pte17g00716 397 SMART WD40_4 94 131 IPR001680 GO:0005515
Pte17g00716 397 SMART WD40_4 210 249 IPR001680 GO:0005515
Pte17g00716 397 SMART WD40_4 344 391 IPR001680 GO:0005515
Pte17g00716 397 SMART WD40_4 302 339 IPR001680 GO:0005515
Pte17g00716 397 SMART WD40_4 168 207 IPR001680 GO:0005515
Pte17g00716 397 SMART WD40_4 46 83 IPR001680 GO:0005515
Pte17g00716 397 SMART WD40_4 256 295 IPR001680 GO:0005515
Pte17g00716 397 ProSiteProfiles Trp-Asp (WD) repeats profile. 218 258 IPR001680 GO:0005515
Pte17g00716 397 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 295 IPR001680 GO:0005515
Pte17g00716 397 Pfam WD domain, G-beta repeat 260 294 IPR001680 GO:0005515
Pte17g00716 397 Pfam WD domain, G-beta repeat 307 338 IPR001680 GO:0005515
Pte17g00716 397 Pfam WD domain, G-beta repeat 48 83 IPR001680 GO:0005515
Pte17g00716 397 Pfam WD domain, G-beta repeat 219 248 IPR001680 GO:0005515
Pte17g00716 397 Pfam WD domain, G-beta repeat 175 206 IPR001680 GO:0005515
Pte17g00716 397 Pfam WD domain, G-beta repeat 346 390 IPR001680 GO:0005515
Pte17g00716 397 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 218 248 - -
Pte17g00716 397 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 393 IPR045182 -
Pte17g00716 397 SUPERFAMILY WD40 repeat-like 45 392 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00716 Pte-Chr17 20323318 20324511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00716 158 397 Acyl Lipid Metabolism Gene Families AT3G18860 25.794 8.29e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00716 - - qsa:O6P43_022753 585.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00716 17 20323318 20324511 Pte17g00716 17 20323318 20324511 RCT