Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00561 ATGGGTTCTTCATACGATAATGTTGATGATATTCCTGAACCATTGATACGACGTAGCTCTATGTCTTTCTTGTCCGAATCATTCAGCAGAGCTCATGAGTTCAGTCCAGAGCTTGAACGCATATTATCAAACACTAAAGTACCCTTCATCAAGCGGCTTGGTCCAGCAACATGCGTCGAACTTAAGCTTCTTTTCTTCTTGGCTTTTCCTGCAGTCGCTGTGTACATGATCAACTATGTCATGTCTATGTCCACTCAAATCTTTGCTGGCCATCTTGGTAACCTTGAACTCGCAGCTGCCTCGCTTGGTAACGCTGGCATCCAAGTCTTTGCCTATGGTCTCATGTTGGGTATGGGAAGCGCAGTGGAGACACTATGTGGGCAAGCATTTGGTGGTAGAAAATATGAAATGCTGGGCATATATTTGCAAAGATCAACCATCCTTCTCTCTCTAGCAGCTGTCCTATTAGCCATACTATACGTCTTCTGCAAGCCTATCCTGATATTGCTAGGGGAATCCCCCAGAATTGCTTCCGCTGCTGCTCTCTTTGTATATGGCTTAATACCTCAAATCTTTGCCTACGCCATAAATTTCCCTATGCAGAAATTTCTACAAGCTCAAAGCATTGTGACCCCAAGTGCATTTATCTCGTTAGCCACACTGTTCTTACACATTTTCTTGACCTGGATTGCAGTGAGCAAGATGAAACTTGGTTTGTTGGGTGCATCATTAGTATTGAGCTTTTCATGGTGGATCATTGTGATTGCTCAGTTTGTTTACATAGTGAAGAGTGATGAGTGTAGGCTAACATGGCGTGGGTTTTCAGTACAAGCATTTAGAGGGCTTTACGGATTCTTCAAGCTATCAGCAGCATCAGCTGTAATGCTTTGCCTTGAGACATGGTACTTTCAAATTCTGGTTTTGATTGCTGGGTTGCTGCCTCATCCTGAATTGGCTCTTGACTCTCTTTCCATCTGTACTACGATTTCTGGTTGGGTGTTCATGATCTCAGTTGGATTCAATGCAGCAGCAAGTGTCAGAGTGAGCAACGAGCTGGGAGCGAAGAATCCAAGATCGGCAGCCTTCTCCGTGGTGGTTGTGACAGTGATTTCATTTGTCATATCAGTTATTGTGGCAATCGTGATCATTTTACTGCGAGATGTCTTGAGCTTTGCCTTCACTGAAGGTGAAGCTGTTGCAGCTGCTGTCTCCGACCTTGCCCCTTTACTGGCCCTCTCACTTGTCCTCAATGGCATTCAGCCTGTTTTGTCTGGAGTTGCAGTTGGATGTGGATGGCAAACTTTCGTTGCATATGTCAATGTTGGTTGCTACTATGCAGTTGGACTACCATTTGGCGCTGTTCTCGGCTTTTACTTCAACTTTGGGGCTAAGGGAATATGGCTGGGAATGTTAGGCGGCACATTGTTGCAGACTTTGATTTTAATGTGGGTGACATTTCGAACGGATTGGGATAAAGAGGTTGAAGAAGCTCAGAAAAGGTTGTATCGGTGGGATGAAAACAATGAACCTCTTCTAAGTTGA 1542 0.4449 MGSSYDNVDDIPEPLIRRSSMSFLSESFSRAHEFSPELERILSNTKVPFIKRLGPATCVELKLLFFLAFPAVAVYMINYVMSMSTQIFAGHLGNLELAAASLGNAGIQVFAYGLMLGMGSAVETLCGQAFGGRKYEMLGIYLQRSTILLSLAAVLLAILYVFCKPILILLGESPRIASAAALFVYGLIPQIFAYAINFPMQKFLQAQSIVTPSAFISLATLFLHIFLTWIAVSKMKLGLLGASLVLSFSWWIIVIAQFVYIVKSDECRLTWRGFSVQAFRGLYGFFKLSAASAVMLCLETWYFQILVLIAGLLPHPELALDSLSICTTISGWVFMISVGFNAAASVRVSNELGAKNPRSAAFSVVVVTVISFVISVIVAIVIILLRDVLSFAFTEGEAVAAAVSDLAPLLALSLVLNGIQPVLSGVAVGCGWQTFVAYVNVGCYYAVGLPFGAVLGFYFNFGAKGIWLGMLGGTLLQTLILMWVTFRTDWDKEVEEAQKRLYRWDENNEPLLS* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00561 513 CDD MATE_eukaryotic 60 496 IPR045069 GO:0042910|GO:1990961
Pte17g00561 513 NCBIfam MATE family efflux transporter 70 467 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Pte17g00561 513 PANTHER MULTIDRUG RESISTANCE PROTEIN 56 490 - -
Pte17g00561 513 Pfam MatE 292 453 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Pte17g00561 513 Pfam MatE 70 230 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00561 Pte-Chr17 8040154 8043343 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00561 K03327 - qsa:O6P43_000578 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00561 17 8040154 8043343 Pte17g00561 17 8040154 8043343 RCT