Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00353 ATGAGTAAAACTAGGGACGAAGAAGACGAAGACGAGTGCTTCTACGAGTCCCTCGATCGTTTGGTCTCTTCTTCTTGTTCCTGTTCCACTTCTAACTCCGACGATGAAAACGACGACGACGACGAAAATTGTATTTCAGACCAGCCGTTTCCGGTTCCGAAATTCCCAATGGGTGTTGCCAAATATGATATATGGATCTCCGAGCCCTCCTCTGTATCAGAACGACGGATTCGTTTACTTCGTGAAATGGGTCTAAGCGGCGACCCGGCATTGTCTCGGTCAAAACCCGGTTACTCCAGTGACCTTATAGAAACTGTTCGCAAGGATCTTGGTCGATCGGTTTCGTCCGAACCTTTGATCCCTCAACAGCGTGCACAAAATTTTGGTGATTCTGTAAACATCTTCCGATCGAAATCTGACGGCGCAACAGATCACACGGAATTGTCAGTTGTTTGTCCATCTAATAGTCAGTGTAAATCTTCTTCTGCTTGTGTTTGTGTTGGTGCTTCTTCTATTCTTTCAATTCATTCGGTCACACCAGAGACCGGTTCATTTGTACATAAGGATAGTGATGTTGTTAAGTCAAATGGCGGTGGATCTTCGGTTGCTAATGGCGTTTCACAAAATAAACCACCTTCTGGTAAAAATGGCAAAAGGGTGGAAGATATCCAATGTGATTCCGCGAAAACTAGTATGGATTTTAGTACTAGTTCAGTAGGACCTATTTCAGTAAATGCGAGTAACGGTGAGTTTGAGGAAGGTCTAAATTGGAATGGTATCGATAGGGTTGATGAACAAGTGTATAAAATTAAGAATTTGGATAATGGGAAGGAATTTGTTGTCAATGAGATTAAAGAAGATGGTACTTGGAACAAGCTTAGGGAAGTGGGAACTGGTAGGCAGTTGACCATGGAGGAATTCGAAATGACAGTTGGCCATTCCCCTATAGTTCAAGAACTAATGAGACGACAGAACGTGGAAGATGGTAATCCGGATAATCAAGAGACAAATGCAAATAGTAGTGTTGGAGGTGGTTCTAAAATGAAGAAAAAAGGTGGTTGGTTGAAAAGCATAAAAACCGTCGCAAGCACAATGACAAGTTATAAAGAGAAACGAAGCAGTGATGAGAGAGACACCTCATCAGAGAAAGGAGGACGAAGGTCAAGCTCTGCTACTGATGACAGTCAAGATGTTTCATTTCATGGACCTGAGAGAGTCAGGGTTAAGCAGTATGGAAAATCACACAAAGAGCTCACAGCACTCTACAAAAGTCAAGAGATACAGGCTCATAATGGGGCTATATGGACCATTAAGTTTAGTTTGGATGGCAAGTATCTTGCTAGTGCAGGGGAGGATTGTGTGATTCATGTTTGGCAAGTTGTGGAGTCGGAGAAGAAGGGGGAATTGTTGATGGAAAAGCCTGAAGATGGGAATTTTAATCTTTTGTTTGTTACTAACGGATCACCAGATCTGAATTCACAGTCACCAAACAAGGATAACCTTTGGGAGAAAAAGAGACGAGGAAGATCATCTTTGAGCCGAAAGTCATTGAGCTTTGACCATGTGGTGGTGCCAGATAAAGTGTTCGGACTTGCAGAGAAATCCTTCTGCTCATTTCAGGGACATGCTGATGATGTTCTTGATTTATCTTGGTCAAAGTCTCAGCACTTGCTTTCATCTTCAATGGACAAAACAGTGCGCTTATGGCATCTATCAAGCAAGTCGTGTCTGAAAGTATTTTCACACAGTGATTTTGTTACTTGCATCCAGTTTAATCCTGTGGACGATAGATATTTTATTAGTGGGTCCTTGGACCAGAAAGTGCGTATATGGAGCATTCCCGATCGTCAAGTTGTTGATTGGAATGACCTGCATGAAATGGTAACCGCTTCTTGCTATACACCAGATGGTCAGGGTGCACTAGTTGGTTCATACAAGGGGAGCTGCCACTTGTATAACACATCAGAGAATAAGCTGCAGCAGAAAAGTCGAATCAATCTACAGAACAAGAAAAAGAAATCTCATCACAAGAAAATTACTGGATTCATGTTTCTGCCAGGGAGTTCATCAGAAGCACTCATCACATCTGCAGATTCACGAATCCGGGTTGTTGATGGTGTTGATTTGATTAACAAGTTTAAAGGTTTCCGCAACACCAATAGCCAAATCTCAGCTTCCATCACAGCAAATGGCAAATACCTTGTCTCAGCCAGCGAGGATTCGCACGTGTATGTATGGAAACATGAAGGCGATTCCAGACCAAACAGAAGCAAAGGTGTGTCAATCACACGCTCTTATGAGCATTTTCATTGTCAAGATGTATCAGTGGCCATTCCTTGGCCTGGTACTAGTGATGCATGGGCGCTACATGGTAATTGTTCTGCAGTAACAACTGGGGTTGACAACCATTTGGATGAAGCCGCTACAGCTAATCATTCTCCTACCCCTGTGGAGGACTCGAGTAATGATGGTTCTAGATCTGCAACTGGCTGCACCAACAGTCCAGTCCATGGAACCATATCTAGTGCAACAAACAGCTATTTGTTTGATAGGATTTCAGCAACATGGCCTGAGGAAAAAATTATCCTGGCTGCAAGAAATCGAAGTCCTCGAGTCGGTGTGGATTTCTCCAATGGGGTAAATCAAAACATGTCAGCTTGGGGTATGGTAATTGTAACTGCTGGTCTTAAAGGGGAAATTAGAACTTTCCAAAATTTTGGATTGCCACTTCGGTTATGA 2739 0.4283 MSKTRDEEDEDECFYESLDRLVSSSCSCSTSNSDDENDDDDENCISDQPFPVPKFPMGVAKYDIWISEPSSVSERRIRLLREMGLSGDPALSRSKPGYSSDLIETVRKDLGRSVSSEPLIPQQRAQNFGDSVNIFRSKSDGATDHTELSVVCPSNSQCKSSSACVCVGASSILSIHSVTPETGSFVHKDSDVVKSNGGGSSVANGVSQNKPPSGKNGKRVEDIQCDSAKTSMDFSTSSVGPISVNASNGEFEEGLNWNGIDRVDEQVYKIKNLDNGKEFVVNEIKEDGTWNKLREVGTGRQLTMEEFEMTVGHSPIVQELMRRQNVEDGNPDNQETNANSSVGGGSKMKKKGGWLKSIKTVASTMTSYKEKRSSDERDTSSEKGGRRSSSATDDSQDVSFHGPERVRVKQYGKSHKELTALYKSQEIQAHNGAIWTIKFSLDGKYLASAGEDCVIHVWQVVESEKKGELLMEKPEDGNFNLLFVTNGSPDLNSQSPNKDNLWEKKRRGRSSLSRKSLSFDHVVVPDKVFGLAEKSFCSFQGHADDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKVFSHSDFVTCIQFNPVDDRYFISGSLDQKVRIWSIPDRQVVDWNDLHEMVTASCYTPDGQGALVGSYKGSCHLYNTSENKLQQKSRINLQNKKKKSHHKKITGFMFLPGSSSEALITSADSRIRVVDGVDLINKFKGFRNTNSQISASITANGKYLVSASEDSHVYVWKHEGDSRPNRSKGVSITRSYEHFHCQDVSVAIPWPGTSDAWALHGNCSAVTTGVDNHLDEAATANHSPTPVEDSSNDGSRSATGCTNSPVHGTISSATNSYLFDRISATWPEEKIILAARNRSPRVGVDFSNGVNQNMSAWGMVIVTAGLKGEIRTFQNFGLPLRL* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00353 912 ProSiteProfiles Trp-Asp (WD) repeats profile. 427 468 IPR001680 GO:0005515
Pte17g00353 912 SMART WD40_4 660 705 IPR001680 GO:0005515
Pte17g00353 912 SMART WD40_4 615 653 IPR001680 GO:0005515
Pte17g00353 912 SMART WD40_4 532 570 IPR001680 GO:0005515
Pte17g00353 912 SMART WD40_4 573 612 IPR001680 GO:0005515
Pte17g00353 912 SMART WD40_4 706 747 IPR001680 GO:0005515
Pte17g00353 912 SMART WD40_4 420 459 IPR001680 GO:0005515
Pte17g00353 912 SUPERFAMILY WD40 repeat-like 423 750 IPR036322 GO:0005515
Pte17g00353 912 MobiDBLite consensus disorder prediction 808 836 - -
Pte17g00353 912 MobiDBLite consensus disorder prediction 365 409 - -
Pte17g00353 912 MobiDBLite consensus disorder prediction 813 836 - -
Pte17g00353 912 ProSiteProfiles Trp-Asp (WD) repeats profile. 579 613 IPR001680 GO:0005515
Pte17g00353 912 PRINTS G protein beta WD-40 repeat signature 446 460 IPR020472 -
Pte17g00353 912 PRINTS G protein beta WD-40 repeat signature 557 571 IPR020472 -
Pte17g00353 912 PRINTS G protein beta WD-40 repeat signature 599 613 IPR020472 -
Pte17g00353 912 PANTHER WD REPEAT DOMAIN 44 6 909 IPR040324 -
Pte17g00353 912 Gene3D - 517 776 IPR015943 GO:0005515
Pte17g00353 912 MobiDBLite consensus disorder prediction 189 220 - -
Pte17g00353 912 MobiDBLite consensus disorder prediction 194 214 - -
Pte17g00353 912 Pfam WD domain, G-beta repeat 575 612 IPR001680 GO:0005515
Pte17g00353 912 Pfam WD domain, G-beta repeat 723 747 IPR001680 GO:0005515
Pte17g00353 912 Pfam WD domain, G-beta repeat 536 569 IPR001680 GO:0005515
Pte17g00353 912 Pfam WD domain, G-beta repeat 426 458 IPR001680 GO:0005515
Pte17g00353 912 Gene3D - 335 488 IPR015943 GO:0005515
Pte17g00353 912 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 579 613 - -
Pte17g00353 912 ProSiteProfiles Trp-Asp (WD) repeats profile. 539 579 IPR001680 GO:0005515
Pte17g00353 912 MobiDBLite consensus disorder prediction 369 390 - -
Pte17g00353 912 MobiDBLite consensus disorder prediction 330 344 - -
Pte17g00353 912 MobiDBLite consensus disorder prediction 24 50 - -
Pte17g00353 912 MobiDBLite consensus disorder prediction 487 507 - -
Pte17g00353 912 FunFam WD repeat-containing protein 44 520 786 - -
Pte17g00353 912 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 427 460 - -
Pte17g00353 912 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 539 573 - -
Pte17g00353 912 MobiDBLite consensus disorder prediction 327 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00353 Pte-Chr17 4619502 4625206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00353 537 751 Acyl Lipid Metabolism Gene Families AT3G18860 21.778 2.36e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00353 K20241 - qsa:O6P43_029073 1292.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00353 17 4619502 4625206 Pte17g00353 17 4619502 4625206 RCT