LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte17g00315	ATGGCAAACAGTAATCTACCTAGACGGATCATCAAGGAGACTCAGCGTCTTCTCAGTGAACCGGCTCCTGGTATTAGTGCTTCACCATCAGAAGACAATATGCGGTATTTTAATGTTATGATCCTTGGCCCTACTCAGTCTCCTTATGAAGGAGGAGTGTTTAAATTAGAGCTGTTTTTACCAGAGGAATATCCAATGGCTGCTCCCAAGGTCCGGTTTTTGACAAAAATATATCACCCTAACATTGATAAGCTTGGGAGGATATGCCTTGATATTCTGAAGGACAAATGGAGTCCAGCTCTTCAGATTCGAACAGTTCTTTTGAGCATACAAGCTCTTTTGAGTGCTCCCAACCCGGATGATCCACTTTCAGAGAACATAGCTAAGCATTGGAAAACAAATGAAGCAGAGGCGGTTGAAACTGCAAGGGAATGGACTCGCTTGTATGCCAGCGGTGCGTGA	462	0.4416	MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAREWTRLYASGA*	154

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte17g00315	153	Pfam	Ubiquitin-conjugating enzyme	9	145	IPR000608	-
	Pte17g00315	153	Gene3D	Ubiquitin Conjugating Enzyme	1	152	IPR016135	-
	Pte17g00315	153	SMART	ubc_7	8	151	-	-
	Pte17g00315	153	SUPERFAMILY	UBC-like	7	151	IPR016135	-
	Pte17g00315	153	ProSiteProfiles	Ubiquitin-conjugating (UBC) core domain profile.	5	151	IPR000608	-
	Pte17g00315	153	ProSitePatterns	Ubiquitin-conjugating (UBC) active site signature.	78	93	IPR023313	-
	Pte17g00315	153	FunFam	Ubiquitin-conjugating enzyme E2 36	1	152	-	-
	Pte17g00315	153	CDD	UBCc	7	146	IPR000608	-
	Pte17g00315	153	PANTHER	UBIQUITIN-CONJUGATING ENZYME E2	33	138	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte17g00315	Pte-Chr17	4192952	4196749	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte17g00315	8	118	Miscellaneous Gene Families	AT3G17000	29.060	1.15e-11	59.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte17g00315	K10580		-	tcc:18594172	310.071

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pte17g00315	17	4192952	4196749	Pte17g00315	17	4192952	4196749	RCT