Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte17g00283 ATGGCTGCATATACTCCAAAGAACATACTTATCACTGGTGCAGCTGGGTTTATTGCATCCCATGTCGCCAACCGGCTCATTAGGAAACACCCTGCCTACAAAATTGTTGTAATTGACAAACTCGATTACTGTTCCGATCTGAAAAATCTGCTTCCTTCCAAGTCATCCCCCAACTTCAAGTTTGTTAAGGGAGACATTGGAAGTGCTGACCTTGTCAACTACCTGCTCATCACTGAGGCAATCGACACCATTATGCACTTTGCCGCCCAGACTCATGTTGATAATTCTTTTGGTAACAGTTTTGAGTTCACCAAGAATAATATATACGGAACTCATGTCCTCTTGGAAGCCTGCAAGGTTACTGGCAAGGTCAAAAGGTTTATTCATGTGAGTACAGATGAAGTCTACGGTGAGACCGAGGAAGATGCTGTTGTGGGAAATCATGAGGCTTCTCAGCTTCTTCCAACAAATCCATACTCAGCAACAAAAGCTGGAGCAGAGATGCTTGTCATGGCATATGGAAGGTCATATGGATTACCTGTGATCACAACACGTGGAAATAACGTTTATGGACCTAATCAATTTCCTGAAAAGTTGATTCCAAAGTTCATTCTTTTAGCCATGCAAGGCAAGCCACTTCCAATTCATGGGGATGGCTCTAATGTGAGAAGTTATTTATATTGCGAGGATGTTGCAGAGGCTTTTGAGGTTATCCTACACAAGGGAGAAGTTGGCCATGTTTACAATATTGGGACAAAGAAGGAGAGGAGAGTAATAGATGTTGCAAAAGATATTTGCAAACTTTTCTCATTGGATCCTGAGAAGAGCATAAAATTTGTGGAGAACCGGCCTTTCAATGATCAAAGATACTTCTTAGATGATCAAAAGCTGAAGACTTTGGGATGGTCAGAACATACTACATGGGAAGAGGGTTTGAGGAAAACTATGGAGTGGTATATTCAAAATCCGAAGTGGTGGGGTGATGTTTCTGGGGCTTTGATTCCTCATCCTAGAATGTTGATGATGCCCGGTGGGGTTGAGAGACATTTTGATGGAGCTGAAGAGGAGAAGACTGCATTGACATATGTTACAGCAACTAATCCTCACATGGTGGTTCCTTCTTCCAAAACCACTGGTGCTCCCCAAAAATGTCCCTATAAGTTCTTGATCTATGGTAGAACAGGATGGATTGGAGGTCTACTTGGGAAGCTATGTGAGAAGCAAGGGATTCCATTTGAATATGGAAAAGGACGTCTTCAGGATAGGTCATCACTCTCGGCAGACATTCAAACTGTCAAACCAACCCATGTTTTCAACGCTGCAGGAGTGACTGGTAGACCCAATGTTGATTGGTGCGAGTCTCACAAACCAGAGACAATTCGTACTAATGTTTGCGGTACTTTGACATTGGCTGATGTCTGCAGAGAGCATGATATCTTGGTGATCAATTATGCTACTGGGTGTATTTTTGAGTATGATGCTGCTCATCCTGAGGGTTCTGGTATTGGCTTCAAAGAGGAAGATAAACCCAATTTCACTGGATCTTTCTATTCGAAAACTAAGGCCATGGTTGAAGAGCTACTGACAGAATTTGACAATGTCTGCACTCTAAGAGTTCGTATGCCGATTTCATCTGACTTGAATAACCCGAGGAACTTCATCACCAAGATCAGTCGCTACAACAAAGTTGTTAACATTCCAAACAGCATGACTATCTTGGATGAACTTCTACCTATTTCAATAGAGATGGCAAAGAGGAACTTGAAGGGCATTTGGAATTTCACAAATCCAGGTGTTGTGAGCCATAATGAGATTCTGGAGATGTACAAAAAGTACATTGACTCCACTTTCACATGGGTGAACTTCAACCTTGAGGAACAAGCCAAGGTGATTGTTGCTCCGAGAAGCAACAATGAGTTGGATGCATCAAAGTTGAAGAAGGAATTCCCTGAGATGCTCTCTATCAAGGAATCACTGATCAAATATGTCTTTGAACCAAACAGGAAAACAAAAACAACATAG 2022 0.4204 MAAYTPKNILITGAAGFIASHVANRLIRKHPAYKIVVIDKLDYCSDLKNLLPSKSSPNFKFVKGDIGSADLVNYLLITEAIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGKVKRFIHVSTDEVYGETEEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTKKERRVIDVAKDICKLFSLDPEKSIKFVENRPFNDQRYFLDDQKLKTLGWSEHTTWEEGLRKTMEWYIQNPKWWGDVSGALIPHPRMLMMPGGVERHFDGAEEEKTALTYVTATNPHMVVPSSKTTGAPQKCPYKFLIYGRTGWIGGLLGKLCEKQGIPFEYGKGRLQDRSSLSADIQTVKPTHVFNAAGVTGRPNVDWCESHKPETIRTNVCGTLTLADVCREHDILVINYATGCIFEYDAAHPEGSGIGFKEEDKPNFTGSFYSKTKAMVEELLTEFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYKKYIDSTFTWVNFNLEEQAKVIVAPRSNNELDASKLKKEFPEMLSIKESLIKYVFEPNRKTKTT* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte17g00283 673 CDD dTDP_HR_like_SDR_e 387 659 - -
Pte17g00283 673 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 332 IPR036291 -
Pte17g00283 673 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 377 673 - -
Pte17g00283 673 Gene3D - 380 673 - -
Pte17g00283 673 Gene3D - 200 322 - -
Pte17g00283 673 Pfam GDP-mannose 4,6 dehydratase 10 315 IPR016040 -
Pte17g00283 673 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 385 662 IPR036291 -
Pte17g00283 673 Gene3D - 9 313 - -
Pte17g00283 673 Pfam RmlD substrate binding domain 387 557 IPR029903 -
Pte17g00283 673 NCBIfam dTDP-glucose 4,6-dehydratase 8 328 IPR005888 GO:0008460|GO:0009225
Pte17g00283 673 FunFam UDP-glucose 4,6-dehydratase 9 209 - -
Pte17g00283 673 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 4 338 - -
Pte17g00283 673 CDD dTDP_GD_SDR_e 7 323 IPR005888 GO:0008460|GO:0009225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte17g00283 Pte-Chr17 3918263 3920394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte17g00283 8 320 Miscellaneous Gene Families AT4G00110 25.970 1.04e-20 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte17g00283 K12450 - qsu:111999181 1240.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte17g00283 17 3918263 3920394 Pte17g00283 17 3918263 3920394 RCT