Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01317 ATGGCAACTTTTGAGCTGTACAGGAGGTCAACCATCGGAATGTGCCTGACCGAGACTTTGGATGAGATGGTTAACAATGGTACACTCAGTCCCGAGCTTGCTATTCAAGTTCTTGTCCAGTTTGACAAGTCCATGACTGAAGCTCTGGAATCTCAAGTAAAGAGCAAGGTCTCCATTAAGGGACATCTTCATACCTACAGATTCTGCGACAATGTTTGGACCTTCATTTTACAGGATGCATTGTTTAAGAATGAAGAACTCCAGGAAAATGTTGGACGGGTTAAAATTGTGGCTTGCGACTCAAAATTGCTCTCTCAGTGA 321 0.433 MATFELYRRSTIGMCLTETLDEMVNNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIKGHLHTYRFCDNVWTFILQDALFKNEELQENVGRVKIVACDSKLLSQ* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01317 106 Gene3D - 55 105 IPR009088 GO:0005672|GO:0006367
Pte16g01317 106 CDD TFIIA_gamma_C 57 102 IPR015871 GO:0005672|GO:0006367
Pte16g01317 106 Gene3D - 3 54 IPR009083 GO:0005672|GO:0006367
Pte16g01317 106 FunFam Transcription initiation factor IIA subunit 2 55 106 - -
Pte16g01317 106 Pfam Transcription initiation factor IIA, gamma subunit 60 101 IPR015871 GO:0005672|GO:0006367
Pte16g01317 106 PIRSF TFIIA_gamma_hum 1 106 IPR003194 GO:0005672|GO:0006367
Pte16g01317 106 FunFam Transcription initiation factor IIA subunit 2 2 54 - -
Pte16g01317 106 Pfam Transcription initiation factor IIA, gamma subunit, helical domain 4 49 IPR015872 GO:0005672|GO:0006367
Pte16g01317 106 PANTHER TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 1 106 IPR003194 GO:0005672|GO:0006367
Pte16g01317 106 CDD TFIIA_gamma_N 4 49 IPR015872 GO:0005672|GO:0006367
Pte16g01317 106 SUPERFAMILY Transcription factor IIA (TFIIA), alpha-helical domain 4 54 - -
Pte16g01317 106 SUPERFAMILY Transcription factor IIA (TFIIA), beta-barrel domain 52 102 IPR009088 GO:0005672|GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01317 Pte-Chr16 32699853 32702733 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01317 K03123 - pvy:116137693 205.682
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g01317 16 32699853 32702733 Pte16g01317 16 32699853 32702733 RCT