Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01300 ATGCATGTAACCAGGAATCTAGGGTTTTCAAGCTTGCTCCTTGTGCTTTGTTTGGTTGTACCAGTGATTTGGTTTGTAATTCGGAGAAAATGGCGTGTTGCTGCGGCGAGGAGTGAAGAGATCAAGAGGCTTCTCATTTTGGCGTCGGAAGAGGCTGCCAGAGCGGAATTTGAAGCAACTGTTTCCTACAATTCATTTCCAATTGCTAATAAGAATCAATGTGCGGTGTGTTATTGTCCCACCTCTACGCGCTGCGCTCAATGCAAAGCGGTTCGTTACTGTTCCGGTAAGTGTCAAATCATTCATTGGCGTCAAGGTCACAAGGAGGAATGTCGTCCTGCTAGCATCACTTACAGGAGAGATGATGGGGTAGGTGATTCTTCCAAGGAGGCTTCAAAATTGGACAAGCTTGCGATTAACGACAACAAGTCTTACATTGAAAGTGAATGTTATGCTAAACCAATCAATGAGCCATCTGAGAATTGTCTGTCATCTGATGATGAAAGGAATTCTGAAGTTTCATGTGGGCTTGATGCCAACATTGAGGTCAAGCCTCTTGAGGAAACCAAGGGATCCCATTCGGCATCTGAATTGTCTACTAGCACATACTCTGGGTTCTCTTCTTCCAACAATAGTAGTGAATCATCTGATGATGCTTCTATCAGCGAGACCAATACATTACATCATCTTGAACAACCAGATGGACATACATTGCTAGATCGTGCATTTGGAATTCTTGACACAAATTATGATGTGGATATAATAGAAACCATGTCAAACTCACCAAAGTTTGCCAGCTTGGTTGATTCTGTAGGTGGTTTCACTAAATTGAATAAGTTAAATGGAACTGGAAATAAAGGTGTGAGTAAGCATGCACCAAATGGTTATTCCGATTACTGCGGTGACACTCTTGATTTAGATTCTAATGGATGTAATAGTAGCAGGAAATCTATTTCTGTAGCATCTCCACTTTATTCATATAAAGCTTCGCCTGCCTCCCATGCACAAGCCCCCGGGGCAAATAGATTTGAGTTGGATGGTACTTGTTTAAACTCAGCTGCCAACAGTAAGCCATTTACGGAAACAGCATCAGAAGTAGTGAGGCCTTCAAGGATCATGGACTCCCCCTCTGCAAATGATGTCTACCAGGGACCCATCCTTACGAATGATGGAACTGCTAATAGTTCGCATAAATTAGAGATCAAAGAAGATAAGTCTGTGCCATCTAAATCAACTCATGTCCTTCTATCTTTTAAGAGAGATGAAGATTCAAGCTGTACAATTGGTTCAGGTGGCAATGGCTTACAACTCAGAAGTTCTCAACGTTCAAATTATGTTAGGAATGATCAAAGCTGTGTTTCTCATCCAATAAATTCTAGTGAAGTGAGCAGTACATCACATGAAAGAGGCTATTTATGTGGCACAGAAAGGCATCCGATTCGCAATGAGAGATGTGGAGAAAATGGCACTCAGTCTGCTATTTCTACCTCCCAGGCACCTACCCCTTCATTAAGTTGTGAGAATGGTTTAAAAGCTTCAGTGTCAAAAGTTGTTGATCAGCTCAAAGGATCAAAGTCGTCGAAGTACCATCCATCAATGATTGGGAGTGAAACTCCCGGAAGATACAAGGACAAGGGACTTTTTCCATATGACTTATTTGTCAAGCTTCATATTTGGAACAAGGTGCAACTGCAACCATGCGGTCTAATAAACTGTGGGAACAGCTGCTATGCAAATGTGGTGCTCCAGTGCTTGGCCTTTACACCTCCCCTGACTGCTTATTTTCTTCAAAAGCTCCATTCCAAAGCATGCATAAAGCAAGAATGTTGTTTTACATGTAAGCTCGAAAGTTTGATTCTGAAGGCAAATGAAGGAAAATCTCCACTCTCACCCAAGAGCATACTTTCACTATTACAGAATACTGGATGTCAACTTGGTAATGGAAGAGAGGAAGATGCCCATGAGTTTCTTAGACATGCTATCGACACTATGCAATCTATTTGTCTGATGGAAGCTGGGATTAAAGCATCAAGTTCGCCGGAAGAAGATACCACTTTAGTGGGTTTGACATTTGGAGGATACCTTCGATCAAAGATAAGATGTTCGAAATGTGGTGGGAAGTCTGAGCGCCAAGAAAGAATGATGGATCTTACAGTTGAAATCGAAGGGGATATATTAACCCTAGAAGAAGCTCTCGAAAGATTTACTAGTACTGAGACCTTGGATGGAGAAAACAAGTACCATTGTGTCAGATGTAAATCTTATGAGAAGGCCAAGAAGAAGTTGACAGTTCTGGAGGCACCTAATGTCCTTACCATTGCCTTAAAACGTTTTCAGTCTGGAAAATTTGGGAAGCTCAATAAGCCTATTCGCTTTCCGGAAATTCTCGACTTGGCTCCATATATGAGTGGCACTAGTGACAAGTCTCCCATATACAGACTGTATGCAGTAGTTGTTCATTTGGATATCATGAATACAGCATTTTCTGGTCACTATGTTTGCTATGCAAAGAATATGAAAAACAAGTGGTTCAAGATGGATGACAGTGTGGTGATCCCTGTGGAACTGGAGAGTGTGCTAACAAAAGGGGCATACATGCTTTTCTATGCAAGGTGCTCACCACGGGCCCCTAGATTGATAAGGAACAGAATAATATCCTCGGAACCAAAAATTAAAGTCATTCCTCCGTGGATAAGTGGAAAGAATACCACAATCCAATCAAGATCCGTAGCCACAAATTGTAGTATTAGTCAATCTTTCACTGGCCCTGTTTCTACGGACAGTTCCGTCACTTTAGAGTCATTCTACTCAAAGTTTCAGCATGTGAGAAAGATCCTGGAGGAAGACTCTTCTAGTGATAATTTGTCTCTCATCAGCAACAACTCAGATGAAGGCTCCTGTAGTACTGATAGCACTCGCGATTCTAGCAGCACAGAGGACTTCTCTGATTACATATTTGGTGATCTTGGACGGGGTTGGAATAGGAATCCAGACTCCGACGCTTCTTCATCTTCATCACCTATGTGCTCCACATCATCATCTCCTTTGTATTCTAGATATTCTCCTCTTTCAAATTTGGAACGTTATGATTCAAGATCTACTGACGCGACTGATCCTCAGTCACAGAGTCTTTTGGGTGCTGCTGTTGATGGTAACGCCAACCCTTGTGCTAAGCTCCCTGGGGAGAGTAGGAAGCTTGTCTATTCGGAAAGTGACGACAGTTTTTCTCTTGTGCATTCTGACGCGACGAAAAATTACTGTAATATAGCTAGTGGTAGATGTAGCAATGGTATTAGTTTTAGAGGGACTGTCGAAGAAAGATTAGAATTTAATTCTTGCAATGATTCAAAATCTGATGTATTTTTCAGAACTTCGACGAGAACAAACTGA 3390 0.4174 MHVTRNLGFSSLLLVLCLVVPVIWFVIRRKWRVAAARSEEIKRLLILASEEAARAEFEATVSYNSFPIANKNQCAVCYCPTSTRCAQCKAVRYCSGKCQIIHWRQGHKEECRPASITYRRDDGVGDSSKEASKLDKLAINDNKSYIESECYAKPINEPSENCLSSDDERNSEVSCGLDANIEVKPLEETKGSHSASELSTSTYSGFSSSNNSSESSDDASISETNTLHHLEQPDGHTLLDRAFGILDTNYDVDIIETMSNSPKFASLVDSVGGFTKLNKLNGTGNKGVSKHAPNGYSDYCGDTLDLDSNGCNSSRKSISVASPLYSYKASPASHAQAPGANRFELDGTCLNSAANSKPFTETASEVVRPSRIMDSPSANDVYQGPILTNDGTANSSHKLEIKEDKSVPSKSTHVLLSFKRDEDSSCTIGSGGNGLQLRSSQRSNYVRNDQSCVSHPINSSEVSSTSHERGYLCGTERHPIRNERCGENGTQSAISTSQAPTPSLSCENGLKASVSKVVDQLKGSKSSKYHPSMIGSETPGRYKDKGLFPYDLFVKLHIWNKVQLQPCGLINCGNSCYANVVLQCLAFTPPLTAYFLQKLHSKACIKQECCFTCKLESLILKANEGKSPLSPKSILSLLQNTGCQLGNGREEDAHEFLRHAIDTMQSICLMEAGIKASSSPEEDTTLVGLTFGGYLRSKIRCSKCGGKSERQERMMDLTVEIEGDILTLEEALERFTSTETLDGENKYHCVRCKSYEKAKKKLTVLEAPNVLTIALKRFQSGKFGKLNKPIRFPEILDLAPYMSGTSDKSPIYRLYAVVVHLDIMNTAFSGHYVCYAKNMKNKWFKMDDSVVIPVELESVLTKGAYMLFYARCSPRAPRLIRNRIISSEPKIKVIPPWISGKNTTIQSRSVATNCSISQSFTGPVSTDSSVTLESFYSKFQHVRKILEEDSSSDNLSLISNNSDEGSCSTDSTRDSSSTEDFSDYIFGDLGRGWNRNPDSDASSSSSPMCSTSSSPLYSRYSPLSNLERYDSRSTDATDPQSQSLLGAAVDGNANPCAKLPGESRKLVYSESDDSFSLVHSDATKNYCNIASGRCSNGISFRGTVEERLEFNSCNDSKSDVFFRTSTRTN* 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01300 1129 ProSitePatterns Zinc finger MYND-type signature. 74 111 IPR002893 -
Pte16g01300 1129 MobiDBLite consensus disorder prediction 186 222 - -
Pte16g01300 1129 MobiDBLite consensus disorder prediction 485 502 - -
Pte16g01300 1129 MobiDBLite consensus disorder prediction 192 222 - -
Pte16g01300 1129 FunFam Ubiquitin carboxyl-terminal hydrolase 15 561 880 - -
Pte16g01300 1129 MobiDBLite consensus disorder prediction 996 1021 - -
Pte16g01300 1129 MobiDBLite consensus disorder prediction 483 502 - -
Pte16g01300 1129 Pfam MYND finger 74 111 IPR002893 -
Pte16g01300 1129 Gene3D - 61 115 - -
Pte16g01300 1129 FunFam Ubiquitin carboxyl-terminal hydrolase 15 65 115 - -
Pte16g01300 1129 ProSiteProfiles Zinc finger MYND-type profile. 74 111 IPR002893 -
Pte16g01300 1129 MobiDBLite consensus disorder prediction 953 980 - -
Pte16g01300 1129 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 223 875 - -
Pte16g01300 1129 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 568 583 IPR018200 GO:0004843|GO:0006511
Pte16g01300 1129 Gene3D Cysteine proteinases 559 881 - -
Pte16g01300 1129 MobiDBLite consensus disorder prediction 358 394 - -
Pte16g01300 1129 SUPERFAMILY HIT/MYND zinc finger-like 70 113 - -
Pte16g01300 1129 MobiDBLite consensus disorder prediction 995 1021 - -
Pte16g01300 1129 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 567 872 IPR028889 -
Pte16g01300 1129 SUPERFAMILY Cysteine proteinases 563 875 IPR038765 -
Pte16g01300 1129 Pfam Ubiquitin carboxyl-terminal hydrolase 567 869 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01300 Pte-Chr16 32555587 32561247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01300 564 925 Miscellaneous Gene Families AT2G24640 50.000 1.44e-120 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01300 K11855 - qsa:O6P43_019570 1077.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g01300 16 32555587 32561247 Pte16g01300 16 32555587 32561247 RCT