Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01244 ATGAAATTATGGAGCTGTTTCCCTGCTTTGATAAGGAAGAAGAAACAGAAAGATAAGGTAAATGATATACCTTCAAGACGAGATGCCCTCAGCAAGGATGTGCAGTCAAAGAAATTATCAGCAAACTTTGGTAATGGGTTATCATCTGGAAACCAGAAGAATCGACGGTCTAGTGTAAAGGTAATGAGCGTAGAGAGTCCTATTGCTGTGTATACAACAGCGAAGGCCGCGAAAGCTTATGAAGAGGAAGACGAACATGAAGAAAATTTATGCTCGATCAAGAGGGAACGTTCTGAGTTTGATCTTCAACGCCGTGAAGCTGCTGATTCAAACAGAAATGGTGAGTATACTTCAGACCCTCTTCAACCTAAACAAGTCATGATATCGCCAAAGACAGACTCACCTGGATCATATTCCACCAAGAAAGGAAGCAACGATGACGACAATGATAGTAGTAACAAAAGCAGCTGGGATGGATTCAAAATTGGAAATTCTAACTTGTGGCCCCAAAATGAGTCCGGTGCTTTCTCAGCAGAACCATCTTCCATGGCCAGAGTCAATGAGTGGGTGAAAGATCTTGAAATTCATAACTCATCATCACCATTGGATGATATTGATCATGAAGCTGACGATATTGCCTACCCTCCGTCTGAAAAGAAATACCTACCTAGAAGCGCCAGCTTTTCAAGGCTTTCAAATGCCTGTCTATCTAAGGAGATTTCGTATGTAAATAGCATTGTCCAGTCTCAGAGTACAACTTCAACTGTCGCTCACATCTGTGGCGCTGGTTTGAAAGTTATCCCCAAAATTGTACACTTCTCCAACCTTCGCTATGTGAACCTGTCAAGCAACTGCATTACGCATATCACTCCAGGACTACTCCCCAAAGGCCTCCACTCACTCAATTTGTCAAGAAACAAAATTAGCACCATGGAAGGGCTCAGAGAACTAACGCGCTTGCGGTTACTTGATCTTAGTTACAACCGCATCACAAGAATTGGACAAGGTCTGTCAAACTGCTTTCTTATTAAGGAGCTGTATCTCGCGGGAAACAAGATCAGCAACATTGAAGGGCTACACAGGCTGCTGAAACTTAGAGTCTTTGACGCAAGTTTCAACAAGATCGCTACTACAAAGTCTTTAGGGCAGCTGGTGGCCAATTACAACTCACTTCAAGCTCTAAATTTATTAGGCAATCCGATTCAGAGTAATATGAGTGAGGAACAGCTGCGCAAGGCAGTTTGTGGTCTCTTTCCGAGACTTGTGTACCTGAACAAGCAAACCATCAAGCCTCGGAGGGCTGGAGAAGTACTCCAAGACACTGTTGCCAAAGCTGCTCTTGGAAACGGCAGTTGGAGAAGCCATAGGAAAGCAATGAAGATATCGAGCCAAGTGGGATCCCTTTCCTCCAGCCATGGGCCGAGGAGCAATTTCAGTGTAGTACAGACAAGCTTGCGCAGGTCAAAGAGTCTGATTCAACTACAATTGCGTCGAAATTCATCATCACTGAGACAGAGAAAATATTCATCGTTCAGCTAA 1539 0.4373 MKLWSCFPALIRKKKQKDKVNDIPSRRDALSKDVQSKKLSANFGNGLSSGNQKNRRSSVKVMSVESPIAVYTTAKAAKAYEEEDEHEENLCSIKRERSEFDLQRREAADSNRNGEYTSDPLQPKQVMISPKTDSPGSYSTKKGSNDDDNDSSNKSSWDGFKIGNSNLWPQNESGAFSAEPSSMARVNEWVKDLEIHNSSSPLDDIDHEADDIAYPPSEKKYLPRSASFSRLSNACLSKEISYVNSIVQSQSTTSTVAHICGAGLKVIPKIVHFSNLRYVNLSSNCITHITPGLLPKGLHSLNLSRNKISTMEGLRELTRLRLLDLSYNRITRIGQGLSNCFLIKELYLAGNKISNIEGLHRLLKLRVFDASFNKIATTKSLGQLVANYNSLQALNLLGNPIQSNMSEEQLRKAVCGLFPRLVYLNKQTIKPRRAGEVLQDTVAKAALGNGSWRSHRKAMKISSQVGSLSSSHGPRSNFSVVQTSLRRSKSLIQLQLRRNSSSLRQRKYSSFS* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01244 512 SMART LRR_sd22_2 295 316 - -
Pte16g01244 512 SMART LRR_sd22_2 343 361 - -
Pte16g01244 512 SMART LRR_sd22_2 362 383 - -
Pte16g01244 512 SMART LRR_sd22_2 317 339 - -
Pte16g01244 512 Pfam Leucine rich repeat 274 330 IPR001611 GO:0005515
Pte16g01244 512 SUPERFAMILY Outer arm dynein light chain 1 269 429 - -
Pte16g01244 512 MobiDBLite consensus disorder prediction 155 179 - -
Pte16g01244 512 MobiDBLite consensus disorder prediction 101 179 - -
Pte16g01244 512 Gene3D Ribonuclease Inhibitor 337 434 IPR032675 -
Pte16g01244 512 FunFam Outer arm dynein light chain 1 protein 223 335 - -
Pte16g01244 512 SMART LRR_typ_2 273 296 IPR003591 -
Pte16g01244 512 SMART LRR_typ_2 317 340 IPR003591 -
Pte16g01244 512 PANTHER NISCHARIN RELATED 167 493 - -
Pte16g01244 512 MobiDBLite consensus disorder prediction 17 62 - -
Pte16g01244 512 ProSiteProfiles Leucine-rich repeat profile. 342 363 IPR001611 GO:0005515
Pte16g01244 512 MobiDBLite consensus disorder prediction 35 61 - -
Pte16g01244 512 Gene3D Ribonuclease Inhibitor 231 336 IPR032675 -
Pte16g01244 512 MobiDBLite consensus disorder prediction 113 142 - -
Pte16g01244 512 ProSiteProfiles Leucine-rich repeat profile. 297 318 IPR001611 GO:0005515
Pte16g01244 512 MobiDBLite consensus disorder prediction 17 34 - -
Pte16g01244 512 ProSiteProfiles Leucine-rich repeat profile. 275 296 IPR001611 GO:0005515
Pte16g01244 512 FunFam Outer arm dynein light chain 1 protein 336 434 - -
Pte16g01244 512 ProSiteProfiles Leucine-rich repeat profile. 319 341 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01244 Pte-Chr16 32117679 32119629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g01244 236 330 Receptor kinase-like Gene Family AT4G08850 36.000 6.81e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01244 - - pcin:129294748 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g01244 16 32117679 32119629 Pte16g01244 16 32117679 32119629 RCT