Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01236 ATGTCAGGTGGTGGTAGTAGTGGTGGATGCAGCATAGTATGGTTCAGGAGAGATCTGAGAGTAGAGGATAATCCAGCGCTAGCAGCTGGAGTCAGAACAGGCGCTGTTGTTGCTGTTTTCATATGGGCACCTGAAGAAGAAGGCCACTACCAGCCTGGTAGGGTGTCAAGGTGGTGGCTGAAACAAAGTTTAGCTCATCTCGATTCGTCTTTGAGAAGCCTGGGAACTTCCCTTGTCACCAAGAGGTCAACTGATAGTGTTTCTTCTCTGCTTGAGATTGTCAAGACCACTGGTGCCACTCAGCTCTTCTTCAACCATTTATACGATCCTCTGTCACTCGTCAGAGATCATCGGGCAAAGGAGGTTCTTACTGCTCGTGGCATAGTAGTTCGTTCATTCAATGCAGATTTACTGTATGAACCGTGGGATCTGAATGATGCCCAAGGTAGACCTTTCAAAACCTTCGCTGCTTTCTGGGAGAGGTGCCTTAGCATGCCTTATGATCCAGAGGCACCACTTCTCCCTCCAAAGAAGATTATTCAAGGTGATGTATCAAGGTGTCTTTCAGATACTTTGGTGTTTGAAGATGAATTAGAGAAGGGAAGCAATGCACTTCTTGCTCGGGCATGGTCACCTGGGTGGAGCAATGCTGACAAGGCTTTGACTACATTCATTAATGGCCCCCTAATTGAGTATTCTAAAAACCGAAGGAAGGCAGACAGTGCCACGACCTCATTTCTTTCGCCTCATTTGCATTTTGGAGAGGTGAGTGTGAGAAAAGTCTTTCATCTTGTTCGCATCAAGCAGGTTTTGTGGGCTAATGAAGGAAATAAGGCAGGTGAGGAGAGTGTGGATCTGTTTCTCAAGTCTATTGGTCTAAGAGAATATTCAAGGTACATGAGTTTCAACCATCCCTATAGTCATGAAAGGCCTCTTCTAGGCCACCTAAAGTTCTTCCCCTGGAATGTAAACGAAAGCTATTTTAAGGCATGGAGGCAAGGCAGAACTGGTTATCCATTGGTGGATGCAGGCATGAGAGAGCTCTGGGCCACTGGTTGGTTACATGATCGAATTCGAGTCGTAGTTTCCAGTTTCTTTGTGAAGGTTCTGCAGCTTCCATGGCGATGGGGTATGAAGTATTTTTGGGATACCCTCTTGGATGCAGATCTTGAAAGTGATGCCCTTGGTTGGCAGTACATTTCTGGTTCACTACCTGATGGTCGTGAATTGGATAGAATAGATAATCCTCAGTTTGAGGGTTACATATTTGACCCTAATGGAGAATATGTAAGAAGATGGCTCCCTGAACTTTCCAGGCTTCCCACTGAATGGATACATCATCCATGGAATGCTCCTGAATCTGTACTCCAAGCCGCAGGAATTGAACTGGGTTCAAACTACCCTCTACCAATTGTAGGCATAGATGCAGCAAAAGCTAGGTTGGAAGAAGCACTAACGGAAATGTGGCAGTTAGAAGCAGCTTCAAGAGCTGCAAATGAAAATGGTACTGAAGAAGGACTAGGAGACTCGTCTGAATCAATCCCTATTGCGTTTCCTCAAGATGTTCAAATGGAAGAAATCCATGAACCTGTGAGGAACAACCCTATCCCTCATATGAGGCGCTATGAGGATCAGATGGTTCCCAGCATGACCACTTCTTCTCTGATTAGATCGGATGAGGAAGAAACCTCAGTTGATCGAAGCTCTGCACACCAAACTAGAGCAGAAGTGCCCTTCAATGTAAATCTTACTCAGCAAGCAAGAAGAGACTCATTTAACCAAGGAGCCTTGCAGAATGTCCATGGAAGTCCTCAGCTGCAGTTTAACTCAATGATTGAGCAGCAAAATGCAGCTGAAGATTCTACTGCAGAATCTTCTAGTACTGGTAGGAGAGAAAGGGATGGAGGCATAGTTCCTGTGTGGTCTCCTCAAACTTCTAGTTACTCAGAGCAGTTTGCAGGTGATGAAACTGGTATAGGAACCAATTCAGCTTTTTTACAGAGGCACTCTCCTCAGTCTCACCAATTGATCAACTGGAGGCGGCTATCACAGACCGGGTAG 2061 0.4561 MSGGGSSGGCSIVWFRRDLRVEDNPALAAGVRTGAVVAVFIWAPEEEGHYQPGRVSRWWLKQSLAHLDSSLRSLGTSLVTKRSTDSVSSLLEIVKTTGATQLFFNHLYDPLSLVRDHRAKEVLTARGIVVRSFNADLLYEPWDLNDAQGRPFKTFAAFWERCLSMPYDPEAPLLPPKKIIQGDVSRCLSDTLVFEDELEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVDLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFPWNVNESYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYIFDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKARLEEALTEMWQLEAASRAANENGTEEGLGDSSESIPIAFPQDVQMEEIHEPVRNNPIPHMRRYEDQMVPSMTTSSLIRSDEEETSVDRSSAHQTRAEVPFNVNLTQQARRDSFNQGALQNVHGSPQLQFNSMIEQQNAAEDSTAESSSTGRRERDGGIVPVWSPQTSSYSEQFAGDETGIGTNSAFLQRHSPQSHQLINWRRLSQTG* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01236 686 ProSitePatterns DNA photolyases class 1 signature 1. 336 348 IPR018394 -
Pte16g01236 686 FunFam Cryptochrome 1 12 148 - -
Pte16g01236 686 PANTHER CRYPTOCHROME 10 494 IPR002081 -
Pte16g01236 686 MobiDBLite consensus disorder prediction 553 575 - -
Pte16g01236 686 Coils Coil 474 501 - -
Pte16g01236 686 Pfam DNA photolyase 11 167 IPR006050 -
Pte16g01236 686 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 11 181 IPR036155 -
Pte16g01236 686 MobiDBLite consensus disorder prediction 615 673 - -
Pte16g01236 686 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 196 492 IPR036134 -
Pte16g01236 686 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 305 506 - -
Pte16g01236 686 Pfam FAD binding domain of DNA photolyase 287 485 IPR005101 -
Pte16g01236 686 ProSitePatterns DNA photolyases class 1 signature 2. 356 375 IPR018394 -
Pte16g01236 686 FunFam Deoxyribodipyrimidine photo-lyase 305 494 - -
Pte16g01236 686 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 9 138 IPR006050 -
Pte16g01236 686 Gene3D - 138 297 - -
Pte16g01236 686 Pfam Blue/Ultraviolet sensing protein C terminal 515 629 IPR020978 -
Pte16g01236 686 NCBIfam cryptochrome photoreceptor 10 485 IPR014134 GO:0009785|GO:0009882
Pte16g01236 686 PRINTS DNA photolyase signature 395 409 IPR002081 -
Pte16g01236 686 PRINTS DNA photolyase signature 336 352 IPR002081 -
Pte16g01236 686 PRINTS DNA photolyase signature 356 374 IPR002081 -
Pte16g01236 686 MobiDBLite consensus disorder prediction 640 673 - -
Pte16g01236 686 Gene3D HUPs 12 210 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01236 Pte-Chr16 32049369 32054158 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01236 K12118 - qsa:O6P43_019640 1191.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g01236 16 32049369 32054158 Pte16g01236 16 32049369 32054158 RCT