Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g01227 ATGTTCAAAATCGGTGAGAGAAATAAGAGGGTCACGATGAACATGAGGAGAGATGGTGGAGAAGTTGATATTACTAGTAGGTGGTTCAGTAAGACTCCCACTGCTGCACCATATCTGAATCTTCTTCATCAACGTAATCTTTCACAGACCAAAGTTAATGCTCTGCCATCAGAGTGTTCTCCTCCTTCGAATTCCAGTAATGGATTCAATTTCTCCGATTGTGATTCTCCATATTCAGCTGTTACCTTTCAGGACGTTTTGCGTGGTCTGACAACCACAGGTGATCATAACATCAATGAGATTTGCTTGGCCTCTGGATCACGAGGAATTTGTCATTTTAACAAGATCATCCATAGTAACAACTGGGTTGATAATGATGTGGGGTTGTCTGAAACTTTCAGCAGAATGCATATGGGAGATGAACATGTTGGCGGCACCAAAACCAATGGCTTTGCTACAGATTCCAAAGGCCAATTCATTTCTGATAACTATCTGAGTGCCATCAATCCCTATAACGATGTTGGAACGCGTGGCCAATTTAAGGATATTCAACCCTTTGCTTGTGGGGTTTCACCGGGTTTAGCAGACAACATGCAGTGGACGTCGCTTGGTTCACGAAACGAATATGTAGTTGGTAACCCAATGGAGTCTTGTCTGTCTGGTCAGTCTGATACTCTGTATTCTGGTTCCGGCTGGGAAGGAAATCCATTACTCAATCAAATGTGTCATTTATCAGACCAATCAACAGAACAAGGAAAGATAAATTGTAATGCAGGTGTGGATTCACAGGACCCCTCTACGATTAGGCCTTATCTAACTGGTGCTAACATCAGGTCATACATTTGTGGCATGGACAGTAATGGAAGCAGGGGTCTGGTGAACGCCATGGCATTCTACCAGTCGATGAATCCCAGTGTGACTCTGAATCTGAATCCATTAGGTGGTTGTTCGAGTGCAAACCCTGAACCTCTGGTTCATCAAACTTTTGACTCCAATCTACTTGCAGGGGACCCTTTGGCCTATAGATATGATGATGGTTTCACCGTTCAAGAAAACAATTTGAAATATGCCATTAATAAAGAATGCAACTACGTTAGGGGACACAACAACAAATTCCAAAGTGAAATTGCAATTGGAGTTAGGCCAGACAAGAATTCCTGTCAAGATGGCTATACGCCGTCACTACAAATTTGTGAAAGTGAGTCGGGTTTAAACAGTGAAATGGCATTGCCTTTGTCTTTGGCTGAGCTGCAAATGTACATATACTCCCTGGCAAAGGATCAAAACGGTTGTCGTATGTTACAAAGGATGTTGGATGGGGGAACCTGTCAATACGTACAAATGATATTTCAGGGGATTCTACAACATGTAATTGAACTCATGATAGACCCTTTTGGAAATTATCTTGTCCAGAAGCTCTTAGATGTCTGTAGTGAGCAACATAGAATGCAGATTCTATTCGTGGTAACTAAACAGCCAGGACAACTTGTACAAATCTCTTTGGACATGCATGGCACCCGAGTGGTACAGAAGTTGATTGAAACTGTCAAGACCAACAAGCAAATTTCTTTGATCAAGTCCTCTCTTCAACTCGGTTTCCTTCATCTTGTCAAGGATCTCAACGGTAACCATGTCATACAGCGTTGTTTGCAATGCCTTTGCAGCGAAGATAATGAGTTTATTTTTGAGGCTGCTACAAGGTTTTGTGTGGACATGGCAACTCATCAACATGGATGTTGTGTATTACAAAGATGCATTGCTTATGCCAAAGGAAGATATCTTGAAAAGCTGTTGACAGAAATCTGTAGGAATGGGCTTCTCCTTGCTCAAGATCCTTTTGGAAACTATGTTGTTCAATATATTATAGAGATGAAAATTCTCAATGTTGGTTCCAAGCTGATCTCTCAGTTCAAAGGGCACTACGTAAACCTCTCGGTGCAGAAGTTTAGCAGCCATGTTGTTGAAAAATGTCTAAAGCATCTTGAAGAGAGCAGATCAAGAATTGTCCAAGAATTGCTATCTGCATCCCACTTTGAACAATTGCTGCAAGACCCGTACGCCAACTATGTCATTCAGTCTTGTCTTGCAGTTACCAAGGGCCATCTTCATGCTTCATTGGTTGAAGCTGTACGCCCTCACAAAATTTTACGTACCAGTCCTTATTGCAAGAGGATCTTCTCTCGGAACCTTCTCAAAAAGTGA 2202 0.4192 MFKIGERNKRVTMNMRRDGGEVDITSRWFSKTPTAAPYLNLLHQRNLSQTKVNALPSECSPPSNSSNGFNFSDCDSPYSAVTFQDVLRGLTTTGDHNINEICLASGSRGICHFNKIIHSNNWVDNDVGLSETFSRMHMGDEHVGGTKTNGFATDSKGQFISDNYLSAINPYNDVGTRGQFKDIQPFACGVSPGLADNMQWTSLGSRNEYVVGNPMESCLSGQSDTLYSGSGWEGNPLLNQMCHLSDQSTEQGKINCNAGVDSQDPSTIRPYLTGANIRSYICGMDSNGSRGLVNAMAFYQSMNPSVTLNLNPLGGCSSANPEPLVHQTFDSNLLAGDPLAYRYDDGFTVQENNLKYAINKECNYVRGHNNKFQSEIAIGVRPDKNSCQDGYTPSLQICESESGLNSEMALPLSLAELQMYIYSLAKDQNGCRMLQRMLDGGTCQYVQMIFQGILQHVIELMIDPFGNYLVQKLLDVCSEQHRMQILFVVTKQPGQLVQISLDMHGTRVVQKLIETVKTNKQISLIKSSLQLGFLHLVKDLNGNHVIQRCLQCLCSEDNEFIFEAATRFCVDMATHQHGCCVLQRCIAYAKGRYLEKLLTEICRNGLLLAQDPFGNYVVQYIIEMKILNVGSKLISQFKGHYVNLSVQKFSSHVVEKCLKHLEESRSRIVQELLSASHFEQLLQDPYANYVIQSCLAVTKGHLHASLVEAVRPHKILRTSPYCKRIFSRNLLKK* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g01227 733 Pfam Pumilio-family RNA binding repeat 456 486 IPR001313 GO:0003723
Pte16g01227 733 Pfam Pumilio-family RNA binding repeat 421 453 IPR001313 GO:0003723
Pte16g01227 733 Pfam Pumilio-family RNA binding repeat 569 602 IPR001313 GO:0003723
Pte16g01227 733 Pfam Pumilio-family RNA binding repeat 533 563 IPR001313 GO:0003723
Pte16g01227 733 Pfam Pumilio-family RNA binding repeat 608 623 IPR001313 GO:0003723
Pte16g01227 733 Pfam Pumilio-family RNA binding repeat 640 673 IPR001313 GO:0003723
Pte16g01227 733 Pfam Pumilio-family RNA binding repeat 495 524 IPR001313 GO:0003723
Pte16g01227 733 Pfam Pumilio-family RNA binding repeat 677 697 IPR001313 GO:0003723
Pte16g01227 733 FunFam Pumilio homolog 9 404 733 - -
Pte16g01227 733 CDD Pumilio 421 728 IPR033712 GO:0003723
Pte16g01227 733 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 287 728 - -
Pte16g01227 733 ProSiteProfiles Pumilio RNA-binding repeat profile. 416 451 IPR001313 GO:0003723
Pte16g01227 733 Gene3D - 401 731 IPR011989 -
Pte16g01227 733 ProSiteProfiles Pumilio RNA-binding repeat profile. 636 674 IPR001313 GO:0003723
Pte16g01227 733 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 392 733 IPR033133 GO:0003723
Pte16g01227 733 ProSiteProfiles Pumilio RNA-binding repeat profile. 528 563 IPR001313 GO:0003723
Pte16g01227 733 SMART pum_5 452 487 IPR001313 GO:0003723
Pte16g01227 733 SMART pum_5 564 599 IPR001313 GO:0003723
Pte16g01227 733 SMART pum_5 636 670 IPR001313 GO:0003723
Pte16g01227 733 SMART pum_5 600 635 IPR001313 GO:0003723
Pte16g01227 733 SMART pum_5 528 563 IPR001313 GO:0003723
Pte16g01227 733 SMART pum_5 491 526 IPR001313 GO:0003723
Pte16g01227 733 SMART pum_5 416 451 IPR001313 GO:0003723
Pte16g01227 733 SMART pum_5 673 708 IPR001313 GO:0003723
Pte16g01227 733 ProSiteProfiles Pumilio RNA-binding repeat profile. 488 526 IPR001313 GO:0003723
Pte16g01227 733 ProSiteProfiles Pumilio RNA-binding repeat profile. 600 635 IPR001313 GO:0003723
Pte16g01227 733 SUPERFAMILY ARM repeat 407 727 IPR016024 -
Pte16g01227 733 ProSiteProfiles Pumilio RNA-binding repeat profile. 452 487 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g01227 Pte-Chr16 31995454 31999712 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g01227 - - qsa:O6P43_019655 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g01227 16 31995454 31999712 Pte16g01227 16 31995454 31999712 RCT