Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00338 ATGGAAACCAGGAGACAAGCTTCAATCCTACTTCTCCTTGTCATTCTGATTTCATTATGGAAATGGTCCTCTGCTGCTGGCATTGCCATCTATTGGGGCCAAGGCGGAAACGAAGGTACCTTACAAGCCACTTGTGCCACTGGTAACTACAAGTTTGTGAACATAGCATTCCTCTCTTCTTTTGGCAATGGACATTCAGAATTGAATCTTGCTGGACATTGTGAAATAAAAAGGGGCCAGTGCAAAAAATTGAGCGGTGAAATCAAGTTTTGTCAAAAACGTAATATCAAAGTCTTCCTTTCCATAGGAGGTTCAGATGGAAAATATTCTATTTCCAGAACAAATGCTAAAAAAGTTGCAGAGGACATATGGAACAACTACTTGGGAGGAAGGTCCAAGTCACGTCCACTTGGAGATGCTGAATTGGATGGTGTTGATTTTGATATTGAGAAAGGCAAAGGTCAGCCTTGGGAGGAACTTGCTAGAGCTCTTCATCAGTTAATGTCCAAGGGAAAAAAGAAGATGTACTTGTCTGCAGCCCCACAGTGCCCATTCCCAGATGATTACTTGAAGGCAGCCATCAAAACTCGCTTGTTTGATTATGTGTGGGTACAGTTCTACAACAACCGTCCATGTGAATATAACAAAGGCAACACTAGAAATCTCATTCAGGCATGGAAGAAATGGACCCAAATTCATGCCAACCAATTGTTCTTGGGGCTACCAGCATCAAAGTCAGCAGCAGGGACTGGTTTCATTCCTGCAAAAGAATTGATATCTAACGTGATTCCCATCATAAAAAATTCAAAAAACTACGGTGGAATTATGCTATGGGATAAATCTCATGATAAAGGCTTCAGCAATGCCATCAAGAAAGTGGTAAATGGGAAGGATAAGAGAATAGTTACTCAGAAAGCTGAAAAGCATAAATCCAAAAGGCATCGGAAATTTGGTTATCATAATAAAGAACACAAAAATAAGCACAAGGACATGGAGTAA 999 0.4054 METRRQASILLLLVILISLWKWSSAAGIAIYWGQGGNEGTLQATCATGNYKFVNIAFLSSFGNGHSELNLAGHCEIKRGQCKKLSGEIKFCQKRNIKVFLSIGGSDGKYSISRTNAKKVAEDIWNNYLGGRSKSRPLGDAELDGVDFDIEKGKGQPWEELARALHQLMSKGKKKMYLSAAPQCPFPDDYLKAAIKTRLFDYVWVQFYNNRPCEYNKGNTRNLIQAWKKWTQIHANQLFLGLPASKSAAGTGFIPAKELISNVIPIIKNSKNYGGIMLWDKSHDKGFSNAIKKVVNGKDKRIVTQKAEKHKSKRHRKFGYHNKEHKNKHKDME* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00338 332 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 142 150 IPR001579 GO:0004553|GO:0005975
Pte16g00338 332 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 297 IPR001223 GO:0005975
Pte16g00338 332 MobiDBLite consensus disorder prediction 306 323 - -
Pte16g00338 332 FunFam Acidic endochitinase SE2 26 294 - -
Pte16g00338 332 Gene3D Glycosidases 27 294 - -
Pte16g00338 332 CDD GH18_hevamine_XipI_class_III 26 291 IPR045321 -
Pte16g00338 332 PANTHER ENDOCHITINASE 10 291 - -
Pte16g00338 332 Pfam Glycosyl hydrolases family 18 28 283 IPR001223 GO:0005975
Pte16g00338 332 MobiDBLite consensus disorder prediction 303 332 - -
Pte16g00338 332 SUPERFAMILY (Trans)glycosidases 24 285 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00338 Pte-Chr16 4464532 4465530 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00338 3 294 Glycoside Hydrolase AT5G24090 54.515 1.06e-112 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00338 K01183 - pop:18103617 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00338 16 4464532 4465530 Pte16g00338 16 4464532 4465530 RCT