Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00307 ATGGTGATCGGAGTAATTTGGGTGCTTGTTCTGTTGGACTCAGTAGGAAGACTGGATGCAGATGTGAGGCTACCGAGAAATCTGGACACATTTGATTATCAAGCGATCAGTTGCAGAAGGCATAGTGCACTTGTAACAGATTTTGGAGGAGTTGGTGATGGCGAAACATCAAACACAAAGGCATTTCAATCTGCAATCACTAAGCTCAACCATTATGCATCAGATGGCGGTGCACAGTTAATTGTCCCGCCAGGAAAATGGCTAACTGGGTGCTTTCATCTCACCAGCCACTTCACACTTTTTCTCGAAAAGGATGCTGTTCTTCTTGCTTCTCAAGACGAATCAGAGTGGCCACAACTTCCTGTGCTTCCTTCTTATGGGGGAGGAAGAAGTGCCCCTGCTGGAAGGTATAGTAGTCTCATTTTTGGTACAAACCTCACTGATGTAGTAATTACTGGTAACAATGGAACCATTGATGGTCAGGGTGCTTATTGGTGGGACAAGTTCAAGAAGGGCCAGTTGAATCTCACCAGACCATACTTGATTGAAATTATGTACTCTAATCAGATTCAGATATCAAATATCACTTTGGTCAATTCTCCATCATGGCATGTCCATCCAATTTACAGCAGGAATATAATAATCCAAGGTCTAACAATTCTTGCACCTATTGAAGTTCCTAATACTGATGGCATTAACCCAGATTCATGTACAAACACCAGAATTGAAGATTGTTATATAGTCTCTGGAGATGATTGCATTGCAGTAAAGAGTGGTTGGGATCAATATGGAATCAAGTTTGGAATGCCAACTCAACATTTAATTATCAGAAGGTTATTTTGTGTATCCCCAGACAGTGCTGTCATTGCTCTAGGTAGTGAAATGTCTGGTGGGATTCAGGATGTCAGAGCTGAAGACATTACAGCAATAAATACTCAGTCAGCTGTTAGAATCAAAACAGCACCAGGAAGAGGAGGGTATGTGAAAGACATATTTGTCAGAAGAATGACATTGAAGACAATGAAATATGTGTTTTGGATGACAGGCGATTACAAGTCACACGCAGACACAGAGTTTGACCCCAAAGCATTTCCTAAAATCACAGGAATAAATTACAAGGATGTTGTAGCTAAGAATGTTACTTACTCAGCAAGACTTGCAGGAATTGCTGGTGAACCTTTTAGAGGTATTTGCATTTCCAACGTGACAATCACATTGGCTGAGAAGGCAAAGAAGCTCCAATGGAATTGCACTAATATTGAGGGTGTGACAAGCAATGTGTCTCCTAAGGCATGTGATCTGTTGCCAGAGAAGGAAAAGGGAGTTGACTGTCCATTTCCAGATGATACATAA 1353 0.4132 MVIGVIWVLVLLDSVGRLDADVRLPRNLDTFDYQAISCRRHSALVTDFGGVGDGETSNTKAFQSAITKLNHYASDGGAQLIVPPGKWLTGCFHLTSHFTLFLEKDAVLLASQDESEWPQLPVLPSYGGGRSAPAGRYSSLIFGTNLTDVVITGNNGTIDGQGAYWWDKFKKGQLNLTRPYLIEIMYSNQIQISNITLVNSPSWHVHPIYSRNIIIQGLTILAPIEVPNTDGINPDSCTNTRIEDCYIVSGDDCIAVKSGWDQYGIKFGMPTQHLIIRRLFCVSPDSAVIALGSEMSGGIQDVRAEDITAINTQSAVRIKTAPGRGGYVKDIFVRRMTLKTMKYVFWMTGDYKSHADTEFDPKAFPKITGINYKDVVAKNVTYSARLAGIAGEPFRGICISNVTITLAEKAKKLQWNCTNIEGVTSNVSPKACDLLPEKEKGVDCPFPDDT* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00307 450 Pfam Glycosyl hydrolases family 28 139 421 IPR000743 GO:0004650|GO:0005975
Pte16g00307 450 Gene3D - 30 432 IPR012334 -
Pte16g00307 450 PANTHER PECTIN LYASE-RELATED 30 449 - -
Pte16g00307 450 SUPERFAMILY Pectin lyase-like 36 437 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00307 Pte-Chr16 3951535 3954612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte16g00307 32 449 Glycoside Hydrolase AT3G48950 70.616 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00307 - - qsa:O6P43_004262 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00307 16 3951535 3954612 Pte16g00307 16 3951535 3954612 RCT