Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte16g00192 ATGATTCGATTCATGGGCTTCGGACAAGGTCGGGAGACATTCACAAGAGGGCCATTGGTAAAGATTGATCCTCAAGGCAGGTGTGGTGGAGTCCTCATTTATGATCTCCAAATGGTCATACTTAAGTCCTCTCAGGCTGGTTCGGGTTTGGTTGGGGATGATGATGCTTTTGGTTCAGGAGGTGCTCTTGCCTCACATATAGAGTCTTCATACATAATAAGTCTAAGAGACTTGGATATGAGGCACGTAAAAGACTTCACATTTGTACATGGTTATATTGAACCTGTAATGGTGATCCTACATGAACGTGAGCTTACTTGGGCGGGTCGTGTATCATGGAAGCATCATACATGCATGGTTTCTGCTCTTAGTATAAGCACAACTCTGAAGCAGCATCCACTTATATGGTCAGCTGTTGGTCTTCCTCATGACGCTTACAAGTTACTTCCCGTGCCATCACCAATTGGTGGTGTTCTGGTTTTTGGTGCTAATTCAATTCATTACCACAGTCAGTCAGCTTCTTGTGCATTGGTACTGAACAACTATGCTGTCTCCATAGATGGCAGTCAGGAGATGCCAAGGTCAACTTTCAATGTGGAGCTTGATGCTGCCAATTCTACTTGGTTACTGAATGATGTGGCCCTGCTGTCAACTAAAACTGGAGAGTTGCTTCTTCTTACCCTCGTCTATGATGGAAGGGTTGTTCAGAGACTTGACTTATCAAGATCTAAAGCTTCTGTTCTTTCATCAGGCCTTGCCACAATGGGTAGTTCATTATTTTTTATTGGAAGTCGATTGGGGGATAGTTTGCTGGTGCAATTTTCTTATGGGTCAGGATCCTCAGTAATGTCATCTGATCTGAAAGAGGAGGTTGGAGACATAGAGGGTGATATTCAGTTTGCAAAGAGGCTAAAGAGATCACCTTCTGACGCTTTCCAGGATATGGTCAGTGGCGAGGAACTCTCCTTGTATGGATCTGCTCCAAATAAGACAGAATCAGCACAGAAAACTTTCTCATTTGCTGTAAGGGATTCATTGACAAATGTTGGACCCATAAAAGATTTTGCATATGGTTTAAGGATCAATGCAGATGCAGGTGCAACTGGAATTGCTAAACAAAGTAACTACGAGATGGTATGTTGTTCAGGCCACGGAAAGAATGGTTCTCTTTGTGTTCTTCGACAATCAATTTGCCCAGAAATGATTACTGAGGTTGAACTACCAGGTTGTAAAGGAATTTGGACTGTTTATCACAAGAGCTCACGACTAGAATCTTCTAAGCTAGCTGTTGATGATGATGAATATCATGCGTATTTGATTATAAGTCTGGAGTCTCGAACCATGGTACTTGAAACAGCTGATCTGCTGAGTGAGGTTACTGAAAGTGTAGACTATTTTGTGCAAGGAAAAACAATTGCCGCAGGAAATTTGTTTGGACGAAGTCGAGTTGTCCAAGTTTTTGAACGCGGTGCTCGAATCCTAGATGGTTCCTTCATGACTCAAGATTTAAGCTTCGGCTCTTTGAACTCTGAACCTGCTTCTGGATCCGAGAATCCTTTGGTGTTTTCTGTCTCAATAGCTGACCCATATGTTTTAGTAAGAATGACTGATGGAAGTATTCGACTTCTGATTGGAGATCCTACTACGCACACAGTCTCTTTGAGTACTCCTAGACCATTTGAGGGGTCAAACAAATCAGTTTCTGCATGCACTTTATATCACGACAAAGGACCTCAGCCATGGTTAAGGAAGACAAGCAGTGACGCATGGCTTTCCACTGGTGTTGATGAGGCTATTGATGGTGCTGATGGAGCATCCCAGGATCAGGGCGATATATATTGTGTTGTTAGTTATGATGATGGTGCCCTTGAAATATTTGATGTGCCTAATTTCACTTCGGTTTTCTTTGTTAATAAATTTGTGTCTGGAAAGACATTCCTTGCTGATACATGTGTAAGAGACCTGCCAAAAGATTCTCACAAAGTGCTAACAAGTCCTGAAGATGCTAGCAGCATAGGAAGGAAGGAAAACACACAGAATTTAAAGGTTACTGAATTGGCCATGCAAAGATGGTCAGGAGAGCATACTCGCCCTTTTCTTTTTGCGGTATTAAGTGATGGAACACTTCTTTGTTATCATGCTTACATCTTTGAAGGTTCAGAGGGTACTTCTAAAGTTGATGATATAGTTTCTGCACAAAATCCGGTTGGCCTTGGTGGAAGCAACGTTTCTAGGCTCAGAAATATGAGGTTTCTTCGTGTTCCCTTAGACACGTGTGCAAGGGAGGAGACATCAAGCAAATCATTGGGCCAAAGAATAACTATCTTCAAGAACATAGGTGGTTGTCAAGGACTGTTCCTATCTGGGTCAAGACCGGCTTGGTTAATGCTGTTCAGAGAAAGGCTTCGAGTCCATCCACAGTTATGTGATGGATCCATAGTTGCTTTTACTGTCCTTCACAATGTGAACTGCAATCATGGGCTTATATATGTTACATCACAGGGTATTCTAAAGATCTGCCAGCTTCCATCTGTCTCTAGTTATGACAACTACTGGCCTGTACAGAAGATCCCATTGAAAGCCACTCCACATCAAGTAACTTTCTTTGCAGGGAAGAATTTGTATCCACTTATTGTTTCTTTCCCTGTTCAAAAACCAGTAAATCAAGTTGTTTCATCTCTGATTGATCAAGAAGCAACCCACCAATTAGAGAATTTGAATTTGAGTGTGGAGGAGCTCCATCGTACTTACACAGTGGATGAATTTGAGGTCCGTATTATGGAACCAGATAAATCTGGTGGCCCTTGGCAAACAAAGGCAACAATTCCTATGCAAAGCTCTGAAAATGCTCTTACTGTGAGAGTGGTTACTTTGCTGAATACAGAAACAAAAGAGAATGAGACACTTTTGGCTATTGGAACTGCTTATGTGCAAGGGGAGGATGTTGCTGCAAGAGGACGAGTAATCTTGTTTTCATTTGGAAAAGATACTGAGAACACTCAAAATTTGGTTTCAGAAGTCTACTCAAAGGAATTAAAGGGTGCCATATCTGCTTTGGCCTCACTCCAAGGCAATCTATTGATAGCTTCTGGTCCAAAAATTATCTTGCACAAATGGAATGGCACTGAGTTGAACTATGCTGCCTTTTTTGATGCTCCACCTTTGTATGTTGTTAGCTTAAACATCGTAAAAAATTTTATCCTCATTGGTGATATCCACAAGAGCATATACTTTCTCAGTTGGAAGGAACAGGGCGCCCAACTTAACTTATTAGCCAAGGATTTTGGCTCTCTGGATTGCTTTGCAACCGAATTTTTGATCGATGGAACTACTCTGAGCCTTATGGTTTCCGATGATCAGAAGAACATTCAGATATTTTATTATGCTCCCAAGATATTGGAGAGCTGGAAAGGGCAAAAGCTTCTCTCAAGAGCTGAATTTCACGTTGGTGCCCACGTGACTAAATTCTTGAGACTGCAGATGCTTTCAACGTCATTATCATCCTCTGATCGGAATGCTGCTGCTTCAGGATCTGATAAAACAAACCGCTTTGCTTCATTATTTGGTACACTGGATGGTAGCATTGGTTGTATCGCACCTCTAGACGAACTCACATTTAGAAGATTGCAGTCGTTACAAAGAAAGCTTGTTGATGCTGTTCCACATGTGGCTGGCTTAAATCCTAGATCTTTTCGTCAGTTCCAATCAAATGGAAAAGTTCATCGACCTGGTCCTGATGGCATTGTGGACTTTGAACTGTTACACCATTATGAGATGCTTCCATTTGAAGAACAGCTAGACATCGCTAATCAGATTGGAACAACTCGTTCACAGATCCTTGCAAACCTAAGTGATCTCTCTCTTGGAACTAGCTTCTTGTAA 3882 0.4181 MIRFMGFGQGRETFTRGPLVKIDPQGRCGGVLIYDLQMVILKSSQAGSGLVGDDDAFGSGGALASHIESSYIISLRDLDMRHVKDFTFVHGYIEPVMVILHERELTWAGRVSWKHHTCMVSALSISTTLKQHPLIWSAVGLPHDAYKLLPVPSPIGGVLVFGANSIHYHSQSASCALVLNNYAVSIDGSQEMPRSTFNVELDAANSTWLLNDVALLSTKTGELLLLTLVYDGRVVQRLDLSRSKASVLSSGLATMGSSLFFIGSRLGDSLLVQFSYGSGSSVMSSDLKEEVGDIEGDIQFAKRLKRSPSDAFQDMVSGEELSLYGSAPNKTESAQKTFSFAVRDSLTNVGPIKDFAYGLRINADAGATGIAKQSNYEMVCCSGHGKNGSLCVLRQSICPEMITEVELPGCKGIWTVYHKSSRLESSKLAVDDDEYHAYLIISLESRTMVLETADLLSEVTESVDYFVQGKTIAAGNLFGRSRVVQVFERGARILDGSFMTQDLSFGSLNSEPASGSENPLVFSVSIADPYVLVRMTDGSIRLLIGDPTTHTVSLSTPRPFEGSNKSVSACTLYHDKGPQPWLRKTSSDAWLSTGVDEAIDGADGASQDQGDIYCVVSYDDGALEIFDVPNFTSVFFVNKFVSGKTFLADTCVRDLPKDSHKVLTSPEDASSIGRKENTQNLKVTELAMQRWSGEHTRPFLFAVLSDGTLLCYHAYIFEGSEGTSKVDDIVSAQNPVGLGGSNVSRLRNMRFLRVPLDTCAREETSSKSLGQRITIFKNIGGCQGLFLSGSRPAWLMLFRERLRVHPQLCDGSIVAFTVLHNVNCNHGLIYVTSQGILKICQLPSVSSYDNYWPVQKIPLKATPHQVTFFAGKNLYPLIVSFPVQKPVNQVVSSLIDQEATHQLENLNLSVEELHRTYTVDEFEVRIMEPDKSGGPWQTKATIPMQSSENALTVRVVTLLNTETKENETLLAIGTAYVQGEDVAARGRVILFSFGKDTENTQNLVSEVYSKELKGAISALASLQGNLLIASGPKIILHKWNGTELNYAAFFDAPPLYVVSLNIVKNFILIGDIHKSIYFLSWKEQGAQLNLLAKDFGSLDCFATEFLIDGTTLSLMVSDDQKNIQIFYYAPKILESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSLSSSDRNAAASGSDKTNRFASLFGTLDGSIGCIAPLDELTFRRLQSLQRKLVDAVPHVAGLNPRSFRQFQSNGKVHRPGPDGIVDFELLHHYEMLPFEEQLDIANQIGTTRSQILANLSDLSLGTSFL* 1294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte16g00192 1293 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 16 1279 - -
Pte16g00192 1293 Gene3D - 810 1200 IPR015943 GO:0005515
Pte16g00192 1293 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 17 537 IPR018846 -
Pte16g00192 1293 FunFam cleavage and polyadenylation specificity factor subunit 1 810 1200 - -
Pte16g00192 1293 Pfam CPSF A subunit region 922 1258 IPR004871 GO:0003676|GO:0005634
Pte16g00192 1293 Gene3D - 5 286 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte16g00192 Pte-Chr16 2250853 2275006 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte16g00192 K14401 - tcc:18605417 2083.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00192 16 2250853 2275006 Pte16g00192 16 2250853 2275006 RCT