Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte15g01627 ATGGGAAGAAGTGCGAGAGGTTTAGTTCTGAAGATAGACAAAGGTTGGAAGAAGGGGAGATGGGATGTTTGGTTCAGTAGAGGCGAAGCTTCTTCCGAGCTTTGGGTTCCTAAAGAGTCCAAGAACCTAATGGTCTTGAAAATTGAAGTGGAACCACCAATGGCATCTTTAGGGACTCCTGAGCCACTGATGCACCGGATGGTAAAATACTTGGCCCTCGTCATATCCATGAAAAATAAAGATGGAAAATCTAGTGCAGCAGAGAACATTCAACTTCCTCTATATGGAATACACTCAACAACTGGTGCGGATCCATTCTACTGGATGCGTGTCATTCTTGCCTCAAACCGAGGAACCGTCATGGAGCTCGGAATCACCCCAATTGTCACTTCTGGATTGGTAATGCAACTTCTCGCTGGATCAAAAATAATTGAAGTGGACAACAATGTCCGTGAAGATCGAGCCCTCTTAAATGGAGCACAGAAGTTACTTGGCATCCTCATAGCTGTTGGTGAGGCAGTCGCCTATGTCCTTTCTGGAATGTATGGTAGTGTGAGCCAGCTTGGCGTGGGGAATGCAATACTCATCATCATTCAGCTGTGCTTTGCCGGCATCATTGTAATATGCTTGGATGAACTTCTTCAGAAAGGATATGGACTGGGCTCTGGAATTTCTCTATTCATTGCGACAAACATTTGTGAAAACATAATCTGGAAGGCATTCAGCCCCACCACCATCAATAGCGGAAGGGGAGCTGAATTTGAGGGTGCTGTTATTGCTCTTTTCCATTTACTTATCACACGGACAGACAAGGTTCGAGCACTTCGTGAAGCCTTTTATCGGCAGAATCTTCCAAATGTGACAAATCTGTTGGCGACGGTATTGGTCTTCCTGATTGTGATCTACTTCCAAGGGTTCCGTGTAGTGTTGCCTGTGAGGTCAAAGAATGCCCGTGGGCAGCAGGGTTCTTATCCCATTAAACTCTTCTACACTTCTAACATGCCAATTATTCTACAATCTGCCCTTGTCTCTAACCTCTACTTCATCTCCCAGTTGCTCCACCGAAAGTACAGTGGCAATTTCTTTGTCAATCTTTTGGGTAAATGGAAGGATTCTGAATATGGTGGCCAATCTGTTCCAGTGGGCGGTATTGCTTATTATATCACTGCACCGTCAAGCTTAGCAGATATGGCAGCCAATCCTTTCCATGCATTGTTCTATCTTGTCTTTATGTTATCAGCATGTGCTTTATTCTCAAAAACTTGGATTGAAGTTTCTGGTTCATCAGCTAGAGATGTTGCCAAGCAGTTGAAGGAACAACAAATGGTGATGCCTGGACACCGTGAGTCAAACTTGCAGAAAGAGCTGAACCGCTACATACCCACTGCTGCAGCATTCGGAGGTATGTGCATTGGTGCACTTACCGTGTTAGCTGACTTCATGGGGGCAATTGGTTCAGGGACAGGTATTCTGCTTGCAGTGACAATCATCTATCAATACTTCGAGACCTTTGAGAAGGAAAGAGCAAGCGAGCTTGGATTCTTCGGTTTTTAG 1554 0.4492 MGRSARGLVLKIDKGWKKGRWDVWFSRGEASSELWVPKESKNLMVLKIEVEPPMASLGTPEPLMHRMVKYLALVISMKNKDGKSSAAENIQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVSQLGVGNAILIIIQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLVFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYSGNFFVNLLGKWKDSEYGGQSVPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte15g01627 517 PRINTS Preprotein translocase SecY subunit signature 217 240 - -
Pte15g01627 517 PRINTS Preprotein translocase SecY subunit signature 118 138 - -
Pte15g01627 517 Pfam Plug domain of Sec61p 91 118 IPR019561 -
Pte15g01627 517 PIRSF SecY_Sec61alpha 90 512 IPR002208 GO:0015031|GO:0016020
Pte15g01627 517 Gene3D SecY subunit domain 89 516 IPR023201 -
Pte15g01627 517 Pfam SecY 119 500 IPR002208 GO:0015031|GO:0016020
Pte15g01627 517 NCBIfam preprotein translocase subunit SecY 91 508 IPR002208 GO:0015031|GO:0016020
Pte15g01627 517 ProSitePatterns Protein secY signature 1. 119 138 IPR030659 -
Pte15g01627 517 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 90 511 IPR002208 GO:0015031|GO:0016020
Pte15g01627 517 FunFam Transport Sec61 subunit alpha isoform 2 88 515 - -
Pte15g01627 517 SUPERFAMILY Preprotein translocase SecY subunit 91 507 IPR023201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte15g01627 Pte-Chr15 14264341 14270379 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte15g01627 63 518 Miscellaneous Gene Families AT2G34250 85.745 0.0 819
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte15g01627 K10956 - qsa:O6P43_029204 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte15g01627 15 14264341 14270379 Pte15g01627 15 14264341 14270379 RCT