Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte14g00605 ATGGATGATGACATTGGCATGCTTGAAGAATTTTATGACCAGGATATTGAAGAAGGAATCGAGATGGAACTTTCTCAGTTACCATCATGGAAAAGTGAACATGGTGGAAAGGTTGTCGTGAATGTAGATAGCTTTGGTGCAGCTGGAGATGGAACATCTGATGATACTCTGTCTTTTCAACAAGCTTGGAGTGTTGTATGCTCTACACCAAAAGCTGTTCTCCTAATCCCAGAAAAACGGCGATATCTGGTGAATGCAACGAAATTTGATGGACCTTGTGCAGGCAAGCCAGTGATCCGGATTGATGGAACGATAGTAGCCCCAGATGATCCTGCAAAATGGGATCCTAAATTCCAACGTACATGGCTTGAATTTTCAAACTTAGAAGGAGCTAGTTTCCAAGGAAGCGGACTAATTGATGGCTCAGGCAGCAAGTGGTGGGCAGCATCTTGCAAAAAGAACAAATCTAATCCTTGCAGAGGTGCTCCAACGGCATTAACTATAGATTCAAGCTCAAATGTAAAGATTAGAGGACTGACCATTCAGAACAGCCAGCAGATGCATTTTATCATTGCTCGCTCTGACTCCGTGCGGGTGAATGGAGTGAAAGTCTCATCACCTGGAGATAGTCCAAACACTGATGGAATCCATATAACTCAATCAACCAACGTTGTGGTGCAGAACTGCAAAATCTCTACAGGCGATGACTGCATATCAATCGTCAACGCAAGTTCCAATATAAAAATGAAGAATATCGATTGTGGACCTGGCCATGGAATCAGCATTGGAAGCCTTGGTAAGGATAACTCGGTCGGAATAGTCACGAAAGTAGTGCTGGATACAGCGGTTCTTAGGGGAACCACCAATGGAGTCAGGATTAAGACCTGGCAGGGAGGTTCTGGTTACGTTCGTGGGGTACGTTTCCAAAATGTGAGAACAGAGGACGTAGCCAACCCCATCATTATTGACCAGTTCTACTGTGATTCACCAACCAAATGTCAAAACCAGACATTAGCTGTGAAGATAAGTGAGATCATGTACGAGAATATCACTGGGACCACGAAGAGTTCAAAGCCGATAAGGTTTGACTGCAGTGACACAGTTCCATGCAGTGAGATTGTGCTTAGCAATGTTGACTTGAAGAATGAGGATGGCACAGAAGAGGCCTATTGCCATTCTGCCAAAGGCTTTGGGCAAGGGATTGTCCATCCTTCAGCTGATTGCTTAAGCTCCGTTGACAAAGATACACCCGTTTCCAAATCCACTGAAGAACGCATTGTTCACACTGAGTTGTGA 1296 0.4444 MDDDIGMLEEFYDQDIEEGIEMELSQLPSWKSEHGGKVVVNVDSFGAAGDGTSDDTLSFQQAWSVVCSTPKAVLLIPEKRRYLVNATKFDGPCAGKPVIRIDGTIVAPDDPAKWDPKFQRTWLEFSNLEGASFQGSGLIDGSGSKWWAASCKKNKSNPCRGAPTALTIDSSSNVKIRGLTIQNSQQMHFIIARSDSVRVNGVKVSSPGDSPNTDGIHITQSTNVVVQNCKISTGDDCISIVNASSNIKMKNIDCGPGHGISIGSLGKDNSVGIVTKVVLDTAVLRGTTNGVRIKTWQGGSGYVRGVRFQNVRTEDVANPIIIDQFYCDSPTKCQNQTLAVKISEIMYENITGTTKSSKPIRFDCSDTVPCSEIVLSNVDLKNEDGTEEAYCHSAKGFGQGIVHPSADCLSSVDKDTPVSKSTEERIVHTEL* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte14g00605 431 PANTHER - 37 395 - -
Pte14g00605 431 SMART pbh1 171 220 IPR006626 -
Pte14g00605 431 SMART pbh1 274 295 IPR006626 -
Pte14g00605 431 SMART pbh1 244 264 IPR006626 -
Pte14g00605 431 SMART pbh1 303 324 IPR006626 -
Pte14g00605 431 SMART pbh1 221 242 IPR006626 -
Pte14g00605 431 Gene3D - 28 430 IPR012334 -
Pte14g00605 431 ProSitePatterns Polygalacturonase active site. 251 264 IPR000743 GO:0004650|GO:0005975
Pte14g00605 431 Pfam Glycosyl hydrolases family 28 68 393 IPR000743 GO:0004650|GO:0005975
Pte14g00605 431 FunFam Pectin lyase-like superfamily protein 28 412 - -
Pte14g00605 431 SUPERFAMILY Pectin lyase-like 37 409 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte14g00605 Pte-Chr14 26881849 26884718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte14g00605 28 432 Glycoside Hydrolase AT1G23460 74.447 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte14g00605 - - pvu:PHAVU_003G061700g 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte14g00605 14 26881849 26884718 Pte14g00605 14 26881849 26884718 RCT