Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01225 ATGACACTACGATCGCAAGTCTCTCTACTAGCCATAGCTATCTTCGTCTATTTCGCACTCTCTTCAACTCCAACATCTGCTTACTTCTTCCCTAACGTTTCTTCTCTACCCATCCAGCTGCTCAACAAAACCATCACCACTGCATGGCAAGACTTCATGAACTTTGCCGGCTGCCATGCTGGCAACAAATACGATGGCCTCTCGAAGCTTAAGCAGTACTTTCAACACTTCGGTTACATACCCAATTCTCCTTCCAACTTTACGGACGAATTTGACGACGTTCTTCTATCTGCCATTAAGACTTACCAGAAGAACTTCAACCTCAACGTCACTGGCGAACTTAACTTACAGACTCTGCAACAGCTCGTACGCCCAAGATGTGGAGTAGCTGATATTATTAACGGTTGGACGACCATGAACACCGGGAAGGTTAACAACACGGCGTTTACCAACAGCACTAAGTTCCACTCTGTAGCTCATTACACCTTCTTCCCCGGTCAGCCACGGTGGTCGCGGAGGAAACAGAATCTGAGTTACGCGTTTTTCTCGGGCAATGAGCTCACGGATACGGTGAAGACCGTTTTTAAGTCAGCATTCGATCGGTGGTCGGAGGTGACGACGTTGACATTCACAGAAACACCATCGTTTGAACTTGCTGACATCAAGATCGGATTTTTCGCCGGCAACCACGGTGACGGCGAGCCGTTTGATGGAAAGCTGGGAACTTTAGGACACGCTTTCTCACCCCCAAGTGGGATGTTTCATTTGGATGGAGAAGAAGACTGGGTGGTATCCGGCGACGTGAGGAAGTCGCCACTGTTGAGTGCGGTTGACTTAGAATCAGTAGCTGTCCATGAAATCGGCCATCTGCTTGGATTGGGACACTCATCAGAAGAGGAAGCTATCATGTACCCATCAATATCTTCACGGACGAGGAAGGTGGAACTAACACAAGATGACATACAGGGTGTTCAAGAGCTTTATGGGACGAATCCGAATTTCAACGCGTCATCTACATTGACTCAGGGAAGGGAGATCAGTGGTGGTGGAGGTGGACACCATAGAGTGAGGTCAAGGTGGGGACTGACGATCATGTTGACCATTGGGATAGCCTTTTTAGCTTTGTAG 1128 0.4832 MTLRSQVSLLAIAIFVYFALSSTPTSAYFFPNVSSLPIQLLNKTITTAWQDFMNFAGCHAGNKYDGLSKLKQYFQHFGYIPNSPSNFTDEFDDVLLSAIKTYQKNFNLNVTGELNLQTLQQLVRPRCGVADIINGWTTMNTGKVNNTAFTNSTKFHSVAHYTFFPGQPRWSRRKQNLSYAFFSGNELTDTVKTVFKSAFDRWSEVTTLTFTETPSFELADIKIGFFAGNHGDGEPFDGKLGTLGHAFSPPSGMFHLDGEEDWVVSGDVRKSPLLSAVDLESVAVHEIGHLLGLGHSSEEEAIMYPSISSRTRKVELTQDDIQGVQELYGTNPNFNASSTLTQGREISGGGGGHHRVRSRWGLTIMLTIGIAFLAL* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01225 375 FunFam Metalloendoproteinase 1 57 334 - -
Pte12g01225 375 Pfam Matrixin 170 329 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Pte12g01225 375 CDD ZnMc_MMP 169 329 IPR033739 GO:0008237|GO:0008270
Pte12g01225 375 SUPERFAMILY PGBD-like 58 132 IPR036365 -
Pte12g01225 375 MobiDBLite consensus disorder prediction 332 353 - -
Pte12g01225 375 SMART col_5 166 330 IPR006026 GO:0006508|GO:0008237|GO:0008270
Pte12g01225 375 Pfam Putative peptidoglycan binding domain 67 122 IPR002477 -
Pte12g01225 375 Gene3D Collagenase (Catalytic Domain) 55 335 IPR024079 GO:0008237
Pte12g01225 375 PRINTS Matrixin signature 122 135 IPR021190 GO:0004222|GO:0006508|GO:0008270
Pte12g01225 375 PRINTS Matrixin signature 316 329 IPR021190 GO:0004222|GO:0006508|GO:0008270
Pte12g01225 375 PRINTS Matrixin signature 195 210 IPR021190 GO:0004222|GO:0006508|GO:0008270
Pte12g01225 375 PRINTS Matrixin signature 219 247 IPR021190 GO:0004222|GO:0006508|GO:0008270
Pte12g01225 375 PRINTS Matrixin signature 282 307 IPR021190 GO:0004222|GO:0006508|GO:0008270
Pte12g01225 375 PANTHER MATRIX METALLOPROTEINASE 47 332 - -
Pte12g01225 375 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 163 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01225 Pte-Chr12 33687443 33689431 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01225 - - qsa:O6P43_033114 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g01225 12 33687443 33689431 Pte12g01225 12 33687443 33689431 RCT