Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01221 ATGATCTTATATTTCAAAAGAATCAAAACCCCATTGTCCAAAAACCAATACTATAGTTCTTGTGTCACCACAAGTAAAATGAAACTCCAATTCCACTTGCTTCAATATCTCCTTATTCTCGCCACTTTAATGGGCCTATCCAAACCCGACCCAGACTCACTTCAAGACTATTGCATTGCAGATACAAGCAAGCCTCAAACCCTCTTCCTCAATGGGGTACCTTGCATGAACCCGAACAAAGCATCCTCATCCCACTTTGCTACGTCTGCTTTGTCCAAGCCTGGCAACACAAGTGCCAACCAGTTCGGCTTCAATGTCACCCTCACAACAACAGCTAACCTACCAGGGGTTAACACTATGGGCTTGACAATTGCCCGGGTTGACATTGCTGCTGATGGGGTTGTGCCACTGCACACTCACCCGAGAGCCTCAGAAGTTACAACTTGCCTCAAGGGGGCGCTTCTTGTGGGCTTTGTTGACACTGCCAACAGAGTCTTCACTCAGCAATTAAGGCCCGGTGATTCATTTGTGTTCCCAAAGGGTTTGATTCATTTTCTGTACAATATTGATGAATTTAAACCAGCATTAGCAGTGTCAGGGCTTAACAGCCAGAACCCAGGTGCACAAATAGTTTCAGGTGCTTCATTCACTGGCAAGCCTAATATTCCGGAGATCATATTGGAGAAGACATATAAAATTAGTGCTGCTGATGTTGCTATAGTAGGTAGGAGCCTTGGTGGCTACTTTTGA 750 0.4507 MILYFKRIKTPLSKNQYYSSCVTTSKMKLQFHLLQYLLILATLMGLSKPDPDSLQDYCIADTSKPQTLFLNGVPCMNPNKASSSHFATSALSKPGNTSANQFGFNVTLTTTANLPGVNTMGLTIARVDIAADGVVPLHTHPRASEVTTCLKGALLVGFVDTANRVFTQQLRPGDSFVFPKGLIHFLYNIDEFKPALAVSGLNSQNPGAQIVSGASFTGKPNIPEIILEKTYKISAADVAIVGRSLGGYF* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01221 249 PRINTS Germin signature 138 158 IPR001929 GO:0030145
Pte12g01221 249 PRINTS Germin signature 168 188 IPR001929 GO:0030145
Pte12g01221 249 PRINTS Germin signature 202 217 IPR001929 GO:0030145
Pte12g01221 249 Pfam Cupin 91 236 IPR006045 -
Pte12g01221 249 CDD cupin_OxOx 50 239 IPR001929 GO:0030145
Pte12g01221 249 SMART Cupin_1_3 89 239 IPR006045 -
Pte12g01221 249 Gene3D Jelly Rolls 49 247 IPR014710 -
Pte12g01221 249 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 46 235 - -
Pte12g01221 249 SUPERFAMILY RmlC-like cupins 85 238 IPR011051 -
Pte12g01221 249 ProSitePatterns Germin family signature. 133 146 IPR019780 GO:0030145
Pte12g01221 249 FunFam germin-like protein subfamily 2 member 1 49 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01221 Pte-Chr12 33612617 33613366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01221 27 235 Miscellaneous Gene Families AT5G39130 39.623 4.60e-47 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01221 - - qsa:O6P43_033099 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g01221 12 33612617 33613366 Pte12g01221 12 33612617 33613366 RCT