Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01218 ATGAACAACCACTCTGTTATCCTTTCCACTTCACACTGTTCCACACTTTCAGCTTCACTTTTCTCTGCACGCAAAGCCTCATTTCCCTTCCGTTGTCTACCTCCTCGCCTCCCTTTCAAAACCTCAGGCTTTCAATGTCCGACGTTTCAAAAGTTGCGTTCTTCATTGCGCTTCTCCATGAAGTCCAAATTCCGTGTCGATGATCCCAAGCTCTCCGATGCAGATGAAGAACAAGGAGAAGAAGAAGAAGGTGAAGCAAACGAAGAATTTGATGTTGACGATGATGAAGATGACGGTGCTGAAGTGGCTGCTGATGAATACGACGACGTTTCTGACGATGGTGCTGTGCCAGGTGATGAGGACAGTCAGATTCCCTTGGTTCAAATAATTCGGCATGAAGAATTCAAGTGGCAGAGAGTTGAGAAGCTATGTAATGAAGTCAGAGAGTTCGGGGAGGAGATCATTGATGTTGATGAACTCGCTTCCGTTTATCATTTCAGAATTGATAAGTTTCAGCGTTTGGCGATACAAGCATTCTTGAGAGGTTCGTCGGTAGTGGTTTCTGCACCGACTAGCAGTGGGAAGACTTTGATTGCCGAAGCTGCAGCCGTCGCCACTGTGGCTAGGAAGAGACGTATATTCTACACTACACCGCTCAAGGCACTCTCCAACCAAAAGTTCCGTGAATTTCGTGAAACTTTTGGAGAAAGCACTGTTGGTCTTCTTACCGGAGATTCTGCTATCAACAAAGATGCTCAAGTTTTAATTATGACTACCGAGATATTGCGCAATATGTTATATCAGAGCGTTGGTCACGTTTCTTCTAACAGTGGACTTTTTCATGTCGATGTGATAGTTCTGGATGAAGTGCATTACTTGAGTGACATATCAAGGGGTACAGTTTGGGAAGAGATTGTTATTTACTGCCCAAAAGAAGTTCAACTTCTGTGTTTATCTGCCACTGTTGCAAATCCCGATGAGCTGGCTGGTTGGATTGGTCAGATACATGGAAAAACAGAGTTGGTAACATCTTCAAAGCGTCCCGTTCCTTTGACATGGCATTTTTCTATGAAGACTTCTTTACTTCCTCTTCTTGACGAGAAGGGATCACGCATGAATAGGAAGCTGTCATTCAATTATTTACAGCTGCATGCCTCTAGAGTTAATCCTTACAAGGAAGATTGGTCTAGAAGAAGAAATTCCAGAAAACGTGGAGTTGATATAAGCAATGATAATAAGAGCGGCAAACCTCCTTCAAGGAATGAAATAAATGCATTACGTCGTTCACAAGTTCCTCAAATAACTGATACGTTATTGCAACTTCAGACAAGGGATATGCTACCTGCTATTTGGTTTATCTTTAGCAGAAAGGGTTGTGATGCAGCTGTGCAGTATCTAGAGGATTGCAAGCTCTTAGATGATTGCGAGATGGCTGAAGTTGAACTTGCTTTAAAGAGGTTCCGAGTCCAGTATCCTGATGCTGTAAGGGAGACAGCCGTGAAAGGGCTTCTGAAAGGAGTTGCTGCACATCATGCTGGTTGTTTGCCACTGTGGAAATCATTTGTAGAACAGTTGTTTCAAAGAGGACTTGTCAAGGTTGTTTTTGCTACAGAAACTCTTGCTGCTGGAATAAATATGCCGGCAAGGACAGCTGTTATTTCTTCCCTTAGTAAAAGAGCTGATAGTGGAAGAATTCAATTGAGCTCAAATGAGTTGCTTCAAATGGCTGGACGTGCTGGTCGGAGAGGCATAGATGAACAAGGTCATGCAGTTCTCATTCAGACTCCTAATGAAGGTGCTGAAGAATGCTGCAAGCTCCTATTCGCTGGGCTTCAACCTCTAGTATCACAGTTTACTGCTTCCTATGGCATGGTTCTGAACCTTCTTGCAGGATCAAAAGTCACACGTAGAGTGCACCAAGAAAATGACATGAAACCTCTCCAAACAGGGCGAACTTTGGAAGAAGCTAGGAAGTTGGTTGAGCAGAGTTTTGGAAATTATGTTAGTAGCAGTGTTATGCTTGCTGCGAAAGAAGAATTAGATAAAATACAGCAAGAGATTGATTTTCTGATTTCGGAGATTTCTGATGAGGCCATAAATCAAAAGCTCAGGAAGACCTTATCGTCGATGGCATATACTGAGATCATAGAATTACAAGAAAAACTAAGGCTAGAAAAACGTGTTCGAACTGAACTGCGAAAACTTATGGAGTCAAAGAGGATCTCTTCTTTGAAACCTATATTGGAGGATTCTGAAAGTCAACAGTTGCCCTTCTTATGCTTACAATATAGAGATTCTGAAGGAGTGGAACATTCCATACCTGCTGTGTTTCTGGGAAAAGTTCACAACCTTGGTGCTGCAAAGCTTAAGTATATAATTTCAGATGATTCTTTTGTGATAAACATAAATGAAGAGAAGTCAATTATTACGAACTCGGGCCTCATTACAGATTATGAGCCATCCTATTATGTGGCTCTTGGTTCAGATAATTCCTGGTATCTATTCACAGAGAAGTGGATTAAAACCATATATAGAACAGGCTTACCTAATGTTGCGTTAGCTGAAGGGGATGCTCTGCCTCGGGAAATTATGAGTACGCTTCTGGATAAGGAGGAAATGAAGTGGGACAAGCTTTCTGATTCGGAACTTGGTGGTTTATGGTACATGGAAGGATCTCTTGAGACTTGGGCCTGGAGTTTAAATGTTCCTGTTTTGAGCAGTCTTTCGGAAAATGATGAGGTACTACAGATGTCGCAAGACTATCATGATGCTGTTGAAAAGTACAAAGAACAACGAAATAAAGTTGCGCGGTTGAAGAAAAGAATAACACGCACAGAAGGGTTCAGAGAGTACAAGAATGTATTAGACATGACAAAGTACTCGGAAGAAAAGATCAAACACTTGAAGACCCGATCAAGACGTTTGATCAATCGAATAGAACAGATTGAACCGTCTGGCTGGAAGGAGTTTCTGCATGTGAGCAGTGTTATACATGAGTCAAGGGCATTGGACATTAATACAAATGTTATATTTCCTCTTGGTGAAACTGCTGCAGCAATCCGAGGAGAAAATGAGCTTTGGATCGCAATGGTTCTCCGAAATAAAATTTTGCTGGATCTTAAGCCTGCACAACTTGCTGCTGTGTGTGCAAGTTTAGTCTCTGAGGGGATCAAAATTCGCCCTTGGAAAAATAGTAACTATATATATGAACCGTCAACTACTGTAATGAGGGTCGTCCATTTACTGGATGAGCAAAGAAGCCACTTCCTCCAACTCCAGGAGAAACATGGTGTTAATATACTTTGTTGTTTGGACAGCCAATTTTCTGGTATGGTTGAAGCTTGGGCTTCTGGGCTAACATGGAGGGAAATGATGATGGACTGTGCAATGGATGAGGGGGATCTTGCCCGTCTCCTTAGAAGGACGATCGATCTATTGGCTCAAATTCCCAAGCTTCCAGATATTGACCTTGTGCTGCAAAGAAATGCGGCAATTGCATCTGATGTGATGGATAGGCCACCCATAAGTGATCTGGCTGGATAG 3543 0.4234 MNNHSVILSTSHCSTLSASLFSARKASFPFRCLPPRLPFKTSGFQCPTFQKLRSSLRFSMKSKFRVDDPKLSDADEEQGEEEEGEANEEFDVDDDEDDGAEVAADEYDDVSDDGAVPGDEDSQIPLVQIIRHEEFKWQRVEKLCNEVREFGEEIIDVDELASVYHFRIDKFQRLAIQAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARKRRIFYTTPLKALSNQKFREFRETFGESTVGLLTGDSAINKDAQVLIMTTEILRNMLYQSVGHVSSNSGLFHVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLLCLSATVANPDELAGWIGQIHGKTELVTSSKRPVPLTWHFSMKTSLLPLLDEKGSRMNRKLSFNYLQLHASRVNPYKEDWSRRRNSRKRGVDISNDNKSGKPPSRNEINALRRSQVPQITDTLLQLQTRDMLPAIWFIFSRKGCDAAVQYLEDCKLLDDCEMAEVELALKRFRVQYPDAVRETAVKGLLKGVAAHHAGCLPLWKSFVEQLFQRGLVKVVFATETLAAGINMPARTAVISSLSKRADSGRIQLSSNELLQMAGRAGRRGIDEQGHAVLIQTPNEGAEECCKLLFAGLQPLVSQFTASYGMVLNLLAGSKVTRRVHQENDMKPLQTGRTLEEARKLVEQSFGNYVSSSVMLAAKEELDKIQQEIDFLISEISDEAINQKLRKTLSSMAYTEIIELQEKLRLEKRVRTELRKLMESKRISSLKPILEDSESQQLPFLCLQYRDSEGVEHSIPAVFLGKVHNLGAAKLKYIISDDSFVININEEKSIITNSGLITDYEPSYYVALGSDNSWYLFTEKWIKTIYRTGLPNVALAEGDALPREIMSTLLDKEEMKWDKLSDSELGGLWYMEGSLETWAWSLNVPVLSSLSENDEVLQMSQDYHDAVEKYKEQRNKVARLKKRITRTEGFREYKNVLDMTKYSEEKIKHLKTRSRRLINRIEQIEPSGWKEFLHVSSVIHESRALDINTNVIFPLGETAAAIRGENELWIAMVLRNKILLDLKPAQLAAVCASLVSEGIKIRPWKNSNYIYEPSTTVMRVVHLLDEQRSHFLQLQEKHGVNILCCLDSQFSGMVEAWASGLTWREMMMDCAMDEGDLARLLRRTIDLLAQIPKLPDIDLVLQRNAAIASDVMDRPPISDLAG* 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01218 1180 SMART DSHCT_2 1005 1179 IPR012961 -
Pte12g01218 1180 MobiDBLite consensus disorder prediction 67 96 - -
Pte12g01218 1180 Gene3D - 127 347 IPR027417 -
Pte12g01218 1180 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 176 340 IPR014001 -
Pte12g01218 1180 Coils Coil 673 693 - -
Pte12g01218 1180 MobiDBLite consensus disorder prediction 73 96 - -
Pte12g01218 1180 FunFam ATP-dependent RNA helicase 129 347 - -
Pte12g01218 1180 Pfam DEAD/DEAH box helicase 171 323 IPR011545 GO:0003676|GO:0005524
Pte12g01218 1180 CDD SF2_C_Ski2 427 595 - -
Pte12g01218 1180 Gene3D - 950 1172 - -
Pte12g01218 1180 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 597 IPR027417 -
Pte12g01218 1180 MobiDBLite consensus disorder prediction 394 421 - -
Pte12g01218 1180 Gene3D - 348 614 IPR027417 -
Pte12g01218 1180 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 433 629 IPR001650 -
Pte12g01218 1180 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 94 1160 - -
Pte12g01218 1180 SMART helicmild6 497 583 IPR001650 -
Pte12g01218 1180 FunFam DExH-box ATP-dependent RNA helicase DExH15 chloroplastic 962 1172 - -
Pte12g01218 1180 Pfam DSHCT (NUC185) domain 1008 1175 IPR012961 -
Pte12g01218 1180 MobiDBLite consensus disorder prediction 394 410 - -
Pte12g01218 1180 Coils Coil 921 941 - -
Pte12g01218 1180 SMART ultradead3 164 354 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01218 Pte-Chr12 33541982 33553057 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01218 K26077 - qsa:O6P43_030262 1709.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g01218 12 33541982 33553057 Pte12g01218 12 33541982 33553057 RCT