Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01180 ACAGGCTCGGGGTTTGAGATACTGTGCCAAGGGTTTAATTGGGAATCTAATAAATCTGGAAGATGGTACGTGGAGCTCAAAGAGAAAGCTGCAGAATTGGCTTCTTTTGGTTTCACTGTAATTTGGCTACCACCTCCCACAGAATCTGTTTCACCAGAAGGTTATATGCCAAAGGATTTATATAATTTAAATTCCAGATATGGAAATATTGAGCAATTGAAGGATCTTGTGAAAAGCCTCCATGATGTTGGTATAAAAGTTCTTGGTGATGTGGTTTTGAATCATCGCTGTGCCCACTATCAAAATCAGAATGGTGTTTGGAACATGTTTGGTGGTCGTCTGAATTGGGACGACCGAGCTGTTGTTGGGGATGATCCACACTTTCAGGGTAGGGGCAATAGGAGCAGTGGAGATAATTTCCATGCTGCTCCAAATATTGATCATTCGCAGGAGTTTGTTAGAAGCGATCTCAAAGAATGGTTACGCTGGTTAAGGTTGCAAGAAATTGGATATGATGGATGGAGGCTTGATTTTGTCCGAGGATTTTGGGGTGGTTATGTGAAAGACTATTTGGATGCTACAGAGCCTTACTTTGCAGTTGGAGAGTTCTGGGATTCCCTCAGTTACACATACAATGACATGGATTACAATCAAGACGCACATCGGCAAAGGATCATAGACTGGATCAATGCTACAAATGGAACTGCTGGTGCATTTGATGTCACTACAAAAGGGATTCTTCACTCTGCACTTGAAAGATGTGAATATTGGCGATTATCAGATGAGAAGGGAAAACCTCCTGGTGTGCTTGGATGGTGGCCTTCTCGTGCAGTTACCTTCATAGAAAACCATGACACTGGTTCTACTCAGGGTCATTGGAGATTTCCTGGTGGAAAAGAAATGCAAGGATATGCTTACACCCTTACCCACCCAGGAACGCCATCCGTATTCTTTGACCATCTCTTCTCCCAGTACCAACATGAAATTGCCTCACTTATCTCTTTGAGAAAACGAAGTAAAATTCATTGCAGGAGTCAAGTCGAAATTACCAAGGCAGAGAGAGATGTCTACGCGGCAATAATTGATGAAAAAGTAGCAGTCAAAATCGGTCCTGGTTATTTTGAACCTCCTAGTGGATTGCAAAAATGGACAGTGGCATTGGAAGGATCAGATTACAAGATTTGGCAGGCG 1191 0.4265 TGSGFEILCQGFNWESNKSGRWYVELKEKAAELASFGFTVIWLPPPTESVSPEGYMPKDLYNLNSRYGNIEQLKDLVKSLHDVGIKVLGDVVLNHRCAHYQNQNGVWNMFGGRLNWDDRAVVGDDPHFQGRGNRSSGDNFHAAPNIDHSQEFVRSDLKEWLRWLRLQEIGYDGWRLDFVRGFWGGYVKDYLDATEPYFAVGEFWDSLSYTYNDMDYNQDAHRQRIIDWINATNGTAGAFDVTTKGILHSALERCEYWRLSDEKGKPPGVLGWWPSRAVTFIENHDTGSTQGHWRFPGGKEMQGYAYTLTHPGTPSVFFDHLFSQYQHEIASLISLRKRSKIHCRSQVEITKAERDVYAAIIDEKVAVKIGPGYFEPPSGLQKWTVALEGSDYKIWQA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01180 397 SMART aamy 6 336 IPR006047 GO:0005975
Pte12g01180 397 CDD AmyAc_arch_bac_plant_AmyA 7 347 - -
Pte12g01180 397 SUPERFAMILY (Trans)glycosidases 8 324 IPR017853 -
Pte12g01180 397 SUPERFAMILY Glycosyl hydrolase domain 341 396 - -
Pte12g01180 397 Gene3D - 341 397 IPR013780 -
Pte12g01180 397 Pfam Alpha amylase, catalytic domain 33 287 IPR006047 GO:0005975
Pte12g01180 397 PANTHER ALPHA-AMYLASE 12 396 - -
Pte12g01180 397 PRINTS Alpha-amylase signature 275 287 IPR006046 GO:0004556|GO:0005975|GO:0043169
Pte12g01180 397 PRINTS Alpha-amylase signature 84 95 IPR006046 GO:0004556|GO:0005975|GO:0043169
Pte12g01180 397 PRINTS Alpha-amylase signature 171 182 IPR006046 GO:0004556|GO:0005975|GO:0043169
Pte12g01180 397 Pfam Alpha-amylase C-terminal beta-sheet domain 338 396 IPR012850 GO:0004556|GO:0005509|GO:0005975
Pte12g01180 397 Gene3D Glycosidases 6 340 - -
Pte12g01180 397 SMART alpha-amyl_c2 337 397 IPR012850 GO:0004556|GO:0005509|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01180 Pte-Chr12 31997432 32000608 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01180 1 397 Glycoside Hydrolase AT1G69830 82.620 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01180 K01176 - qsa:O6P43_033061 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g01180 12 31997432 32000608 Pte12g01180 12 31997432 32000608 RCT