Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g01168 ATGTCGACCCCTTCCAGGAAGAGATTGATGAGGGATTTCAAGCGGTTGCAGCAAGATCCTCCCGCAGGGATAAGTGGTGCTCCTCAAGACAACAATATTATGCTTTGGAATGCTGTCATATTTGGCCCTTCAGGTACGTTTAAATTGACACTTCAGTTCACAGAGGACTATCCAAACAAGCCACCAACAGTCCGCTTTGTTTCTAGAATGTTCCACCCAAACATTTATGCAGATGGAAGCATATGTTTGGACATTTTACAAAACCAATGGAGTCCTATTTATGATGTAGCTGCAATTCTTACATCAATTCAGTCATTACTCTGCGACCCAAACCCAAATTCTCCTGCAAATTCTGAAGCTGCACGGATGTTTAGTGAGAATAAGCGTGAATACAATAGAAGGGTACGGGAGATTGTTGAGCAGAGCTGGACTGCTGATTGA 441 0.4308 MSTPSRKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPSGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g01168 146 Pfam Ubiquitin-conjugating enzyme 8 138 IPR000608 -
Pte12g01168 146 FunFam Ubiquitin-conjugating enzyme E2 A 1 145 - -
Pte12g01168 146 Gene3D Ubiquitin Conjugating Enzyme 1 142 IPR016135 -
Pte12g01168 146 SMART ubc_7 7 144 - -
Pte12g01168 146 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 144 IPR000608 -
Pte12g01168 146 CDD UBCc 7 139 IPR000608 -
Pte12g01168 146 SUPERFAMILY UBC-like 1 144 IPR016135 -
Pte12g01168 146 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 143 - -
Pte12g01168 146 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 71 86 IPR023313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g01168 Pte-Chr12 31185769 31188842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g01168 7 114 Miscellaneous Gene Families AT1G17280 29.412 5.75e-12 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g01168 K10573 - jre:108989809 295.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g01168 12 31185769 31188842 Pte12g01168 12 31185769 31188842 RCT