Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00848 ATGCTTGAGTATATCATTGTGCATGTGTTAGTTGATATTGTGAAAGCTGCTTCATCTTCCTTTATCTTATACATCTGCGTGATCTTCTTGATACAGGAACGGAAAAAGTCATCAACTATGGGTAAGACAATTGAGTTGTGCGGATTCCCTAGTGGGGTTTCAGCATCAGATGTCAAATCATTCGTCGAGCAAATTACAGGTGAAGGAACTGTCTATGCTTTGAAAATCAGACAAGGCAAGGGCAGGCTTTCTAAGACATATGCAATTGTTCAATTCACAACAAACAAAGATGCAGATTTTATGGTTTCATTTCCCGAACAAGCGATATGGTATGGTAGTGGTTATCTGAAGGGACGTGAATTGCAATTAGACATTGTGCCAAAACCGAGAACATATCTGCATACATTGGAGGATGTGACCTTGTTCTTGGGATGTCCAAGTTCAAAAGAGAGCTTCTCAGTTTTCTGGAGAAAGACAAATGTTGAAGTTAGGTTTGGACTAGGATTGAGGAAAGTGCAGTTCTTTTTGTCCCATGGTCCTGTCTATTACAGACTTGACCTTTCTTATGAAAACATTTGGCAGATTGAATTGCATCAGCAACAGGGTCAACAGGCCAAGTACCTTATTATTCAGTTATTTGGTGCACCAAGAGTTTTCGAGCAAGATGCGCGGCCTTCGATGAATTTACTTGCTAATCCTCTTTTTAACTATTACAAAGATGGTACTGATGACCAATGGGTTCGAGCAACTGACTTCACTCCTTCGTGTTCGCTTGGACAATCCTCAGCTATATGTTTGAAGCTTCCCCATGGTCACCAACTTCCTGACTTGAGAGAAAATTTTCCCTACTATGTTGAAAGTGAAAAAAATTATGGTTTAGAAATGAGCACCCCTTTCTCCTCCAACCTTGATCTTGTTCCTATGGTGAATTCCCCAGCTGGCATAGACATACCATTTGGGATCTTATTCAAAATCAACTCATTGATTCAGAATGGGTGCATTTCTGGTCCAACACTTGATCGTACCTTCTATCAGTTGGTTGATCCTCGTAGGATTAGCATCAATTTCATTGAACATGCCTTGGAGAAACTGTTTCACCTGAAAGAACTATGCTCTGAGCCTTCAAAGTGGTTAGCTGAGCAGTACTGGAAGTACAGGACATCAAGGAATCCGCCTAGACGTCACACTATCTCTTTAGATTCTGGACTGGTGTATGTCCGTAGAGTTCAAATCACACCTTGCAAAGTCTACTTCTGCGGCCCTGAGGTTAATGTATCCAATCGTGTTATTCGCCATTTCCATCAAGATGTCGATAATTTTCTTCGTGTTTCATTTGTTGATGAGGAATTGGAAAAGCTGTATTCGACAGATATATCTCCTCGAGGCACATCTCCTACTGTTGAGCACAGGAGAACAGCAATTTACAAGAGGATTCTTGATACTCTTAGAAATGGCATTACCGTTGGCAACAAGAGGTTTGAGTTTCTTGCTTTTTCGTCAAGTCAACTACGCGATAATTCAACATGGATGTTTGCTTCAAGACAAGGACTTAGTGCAGCTGATATAAGAAACTGGATGGGAAACTTTCGTGATATCAGAAATGTTGCCAAATATGCTGCCAGACTCGGACAGTCTTTTGGTTCATCTACTGAAACTCTTAGTGTTGTTAAGCATGAGATCGAAATGATTCCTGACATAGAGATTAACCACAATGGCGGCAAGTATAATTTCTCTGATGGAATTGGCAAGATATCCGGTGAATTTGCACGAAGGGTAGCTCAGAAATGTGATCTCAAGTTCACTCCATCCGCCTTTCAGATTCGTTACGGAGGATACAAAGGCGTAGTGGCTGTTGATCCTCGTTCTTCAGTCAAATTATCATTGAGAAAGAGCATGCTGAAATACAAGTCTGAGAACAACAAGTTAGATGTTTTGGCTTACAGCAAATTTCAGCCTTGTTTCCTGAATAGACAAGTGATTACTCTCTTATCTACTCTAGGGGTGAAAGACCATATTTTTGAAAAAAAACAGAAGGAAGCCATCAAGCAGTTAGATGCAATATTAACAGATTCATTCAGGGCTCAGGAGGCCTTGGACTTGATGACACCAGGAGAGAATGCTGATGTCCTGAAAGAAATGCTCAGATGTGGGTATAAACCGGACAAAGAACCTTTTCTGTCAATGATGCTGCAAATCTTGAGGGCGTCGAAGTTGTTGGAATTGAGAATCAAAGCAAGGATTTTCATTCCAAATGGAAGAGCAATGATGGGGTGTCTAGATGAAACACGAACCTTGGAGTATGGTCAAGTGTTTGTTCAAATTTCTTCTGCTAGGTTCAGGCAACTAAATGAGGATTCCTTTGTGCCTGGATCACAACAGCACCGTTTAGTGAAGGGGAAAGTTGTAGTTGCCAAAAACCCCTGCTTGCACCCTGGTGATGTGCGTGTCCTGGAAGCAGTGAATGTTCCAGCTTTGCATCACATGGTGGATTGTATCGTTTTCCCTCAGAAAGGCAAAAGGAAGTTGAAGAGTATTTTGCCAACTACATTGTCAACGATAGTTTAG 2565 0.4121 MLEYIIVHVLVDIVKAASSSFILYICVIFLIQERKKSSTMGKTIELCGFPSGVSASDVKSFVEQITGEGTVYALKIRQGKGRLSKTYAIVQFTTNKDADFMVSFPEQAIWYGSGYLKGRELQLDIVPKPRTYLHTLEDVTLFLGCPSSKESFSVFWRKTNVEVRFGLGLRKVQFFLSHGPVYYRLDLSYENIWQIELHQQQGQQAKYLIIQLFGAPRVFEQDARPSMNLLANPLFNYYKDGTDDQWVRATDFTPSCSLGQSSAICLKLPHGHQLPDLRENFPYYVESEKNYGLEMSTPFSSNLDLVPMVNSPAGIDIPFGILFKINSLIQNGCISGPTLDRTFYQLVDPRRISINFIEHALEKLFHLKELCSEPSKWLAEQYWKYRTSRNPPRRHTISLDSGLVYVRRVQITPCKVYFCGPEVNVSNRVIRHFHQDVDNFLRVSFVDEELEKLYSTDISPRGTSPTVEHRRTAIYKRILDTLRNGITVGNKRFEFLAFSSSQLRDNSTWMFASRQGLSAADIRNWMGNFRDIRNVAKYAARLGQSFGSSTETLSVVKHEIEMIPDIEINHNGGKYNFSDGIGKISGEFARRVAQKCDLKFTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMLKYKSENNKLDVLAYSKFQPCFLNRQVITLLSTLGVKDHIFEKKQKEAIKQLDAILTDSFRAQEALDLMTPGENADVLKEMLRCGYKPDKEPFLSMMLQILRASKLLELRIKARIFIPNGRAMMGCLDETRTLEYGQVFVQISSARFRQLNEDSFVPGSQQHRLVKGKVVVAKNPCLHPGDVRVLEAVNVPALHHMVDCIVFPQKGKRKLKSILPTTLSTIV* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00848 854 Pfam RNA dependent RNA polymerase 411 844 IPR007855 GO:0003968
Pte12g00848 854 PANTHER RNA-DEPENDENT RNA POLYMERASE 39 840 IPR007855 GO:0003968
Pte12g00848 854 SUPERFAMILY RNA-binding domain, RBD 38 108 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00848 Pte-Chr12 9947433 9953482 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00848 K11699 - qsa:O6P43_025942 1155.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00848 12 9947433 9953482 Pte12g00848 12 9947433 9953482 RCT