Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00837 ATGAATATAATTTCAATGATAACTGGCAAGGTTGGAACAAGTGGTTTTGGATCAGCGTCCACTGCCGAGGAGGTGACAGAAGGAGTGGATGCCTCCAAGCTCACTGTTATTATCACTGGTGGGGCTAGTGGGATTGGCTTGGAAACGGCAAGAGTGTTGGCTCTTAGGAAAGCACATGTGATTATTGCTGCGAGGAACATGGAAGCTGCAAATCAGGCCAAGCATACCATTATTGCAGAGAATAAATCTGCAAGAGTTGATGCAATAAAGCTCGATCTTAGCTCCATAAAGTCTGTGAGAGCATTTGTTGAAAATTTTAACGCTCTTAAACTTCCTCTCAACATTTTAATAAACAACGCTGGTGTCATGTTCTGTCCTTATCAGTCCTCAGAAGATGGTATAGAGTTGCAATTTGCAACAAATCATATTGGTCATTTTGTTTTGACAAACCTACTGCTTGAAAACATGAAGAACACAGCAAGATCAAGTGGCATTGAGGGCAGGATCGTGAATTTGTCTTCGATCGCCCACGTTCACACTTATAAAGATGGTATTCGATTTGATGACATCAATGATCCAATGGGCTATTCTGACAAGATGGCTTATGGGCAATCAAAGCTAGCAAACATATTACATGCAAATGAGCTGGCTCGTCGCTTGAGGGAAGAAGGTGTGAACATCACAGTCAACTCCGTCCACCCAGGATTGATAATGACTCCTCTTATGCGGCACTCTGTATTCCTGATGAATCTTCTAAGGGTTTTCACATTTTACCTTTGGAAGAACGTGCCACAGGGGGCAGCCACTACATGCTTAGTTGCACTCCACCCAAGCTTGAAAGGTGTAACTGGAAAGTACTTTGTGGATTGCAATGAGACAAAACCAAGTGCATTTGCAACAAACGAAATGTTAGCAAGGAAGCTATGGGACTTCAGCAACAAGCTTGTCAACTCTGTTTCAAGAAGTGAAACATAA 975 0.4246 MNIISMITGKVGTSGFGSASTAEEVTEGVDASKLTVIITGGASGIGLETARVLALRKAHVIIAARNMEAANQAKHTIIAENKSARVDAIKLDLSSIKSVRAFVENFNALKLPLNILINNAGVMFCPYQSSEDGIELQFATNHIGHFVLTNLLLENMKNTARSSGIEGRIVNLSSIAHVHTYKDGIRFDDINDPMGYSDKMAYGQSKLANILHANELARRLREEGVNITVNSVHPGLIMTPLMRHSVFLMNLLRVFTFYLWKNVPQGAATTCLVALHPSLKGVTGKYFVDCNETKPSAFATNEMLARKLWDFSNKLVNSVSRSET* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00837 324 PRINTS Glucose/ribitol dehydrogenase family signature 111 122 IPR002347 -
Pte12g00837 324 PRINTS Glucose/ribitol dehydrogenase family signature 35 52 IPR002347 -
Pte12g00837 324 PRINTS Glucose/ribitol dehydrogenase family signature 225 242 IPR002347 -
Pte12g00837 324 PRINTS Glucose/ribitol dehydrogenase family signature 161 177 IPR002347 -
Pte12g00837 324 PRINTS Glucose/ribitol dehydrogenase family signature 202 221 IPR002347 -
Pte12g00837 324 CDD retinol-DH_like_SDR_c_like 35 309 - -
Pte12g00837 324 Pfam short chain dehydrogenase 35 180 IPR002347 -
Pte12g00837 324 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 295 IPR036291 -
Pte12g00837 324 Gene3D - 24 319 - -
Pte12g00837 324 PANTHER RETINOL DEHYDROGENASE 14 316 - -
Pte12g00837 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 167 175 IPR002347 -
Pte12g00837 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 202 221 IPR002347 -
Pte12g00837 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 111 122 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00837 Pte-Chr12 9690330 9694615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00837 36 295 Acyl Lipid Metabolism Gene Families AT3G55310 27.536 5.95e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00837 - K11153 qsa:O6P43_010402 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00837 12 9690330 9694615 Pte12g00837 12 9690330 9694615 RCT