Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00740 ATGGATCTGAATTCAGTTATTTGTTTGCTGATACTAATTCATGGAGTTGCAGGAAATATGGATGCTGATATTGGCATGCTTGAAGATTTTTATGGCCAGAATTTTGAAGAAGAAATCGAGATGGAACTTTCTCAGATACCATCTTGGGAAAGTGAACGTGGTGGAAAGGTTCTGGTAAATGTGGATAGCTTCGGTGCAGCTGGAGATGGCATAGCTGATGATACTCCGGCGTTTCAACACGCTTGGAATGTTGCATGCTCTACGCCAAAATCTGTTCTCCTAATCCCAGAAAGACGGCGATATCTGGTGAATGCAACAAAGTTCGACGGACCTTGTACAGGCAAGCCAGTGATCCGGATTGATGGAACAATAGTAGCCCCAGATGATCCTGGAAAATGGGACCCTAAATTCCAACGTACATGGCTTGAATTTTCTAAGGTAGATGGAGCTAGTTTTCAAGGAAGCGGAATAATTGATGGCTCAGGCAGCAAGTGGTGGGCAGCATCTTGCAAAAAGAACAAGACTAATCCTTGCAGAGGTGCTCCAACAGCTTTAACTATAGATTCAAGCTCAAACGTAAAGGTGCGAGGACTGACCATTCAAAACAGCCAACAGATGCATTTTAACATTTCTCGCTGTGACTCTGTGCGGGTGAATGGAATGAAAGTCTCATCACCTGGAGACAGTCCAAACACTGATGGAATCCATATAACTGAATCAACCAACGTTGTTGTGCAAAACTGCAAAATCTCTACAGGCGATGATTGCATATCAATTATCAACGCAAGTTCCAATATAAAAATGAAGAACATTGATTGTGGACCTGGCCATGGAATCAGCATTGGAAGCCTCGGCAAGGATAACTCTGTTGGAATAGTCACCGAAGTACTCCTGGACACAGCGGTTCTTAGGGGCACTACCAACGGAGTCAGGATTAAGACTTGGCAGGGAGGTTCTGGTTACGTTCGTGGAGTACGTTTTCAAAATGTCAGAGCAGAGGACGCTGAGAACCCCATTATCATTGACCAATTCTACTGTGATTCACCAACCATATGTCAAAACCAGACATCAGCTGTGAAGATAAGTGGGATAATGTACGAGAATATCACTGGGACGACGAAGAGTTCAAAGGCAATAAGGTTTGACTGCAGCGACAATGTTCCATGCAGTGAGATTGTGCTCAGCAATGTCGACTTGAAGAACGAGGATGGTACAGAAGAGGCATACTGCCACTCTGCCGAAGTCTTTGGCCAAGGACTTGTTCATCCTGCAGCTGATTGCTTAAGTTCCGAAGACAAAGACACACCCGTTTCCAAATCCAGTGAAGAACATATCCTTCACACTGAGTTGTGA 1353 0.4435 MDLNSVICLLILIHGVAGNMDADIGMLEDFYGQNFEEEIEMELSQIPSWESERGGKVLVNVDSFGAAGDGIADDTPAFQHAWNVACSTPKSVLLIPERRRYLVNATKFDGPCTGKPVIRIDGTIVAPDDPGKWDPKFQRTWLEFSKVDGASFQGSGIIDGSGSKWWAASCKKNKTNPCRGAPTALTIDSSSNVKVRGLTIQNSQQMHFNISRCDSVRVNGMKVSSPGDSPNTDGIHITESTNVVVQNCKISTGDDCISIINASSNIKMKNIDCGPGHGISIGSLGKDNSVGIVTEVLLDTAVLRGTTNGVRIKTWQGGSGYVRGVRFQNVRAEDAENPIIIDQFYCDSPTICQNQTSAVKISGIMYENITGTTKSSKAIRFDCSDNVPCSEIVLSNVDLKNEDGTEEAYCHSAEVFGQGLVHPAADCLSSEDKDTPVSKSSEEHILHTEL* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00740 450 PANTHER - 56 412 - -
Pte12g00740 450 Pfam Glycosyl hydrolases family 28 90 413 IPR000743 GO:0004650|GO:0005975
Pte12g00740 450 SMART pbh1 263 283 IPR006626 -
Pte12g00740 450 SMART pbh1 190 239 IPR006626 -
Pte12g00740 450 SMART pbh1 322 343 IPR006626 -
Pte12g00740 450 SMART pbh1 293 314 IPR006626 -
Pte12g00740 450 SMART pbh1 240 261 IPR006626 -
Pte12g00740 450 Gene3D - 48 448 IPR012334 -
Pte12g00740 450 SUPERFAMILY Pectin lyase-like 57 428 IPR011050 -
Pte12g00740 450 ProSitePatterns Polygalacturonase active site. 270 283 IPR000743 GO:0004650|GO:0005975
Pte12g00740 450 MobiDBLite consensus disorder prediction 430 450 - -
Pte12g00740 450 FunFam Pectin lyase-like superfamily protein 47 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00740 Pte-Chr12 7695879 7699768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00740 47 451 Glycoside Hydrolase AT1G23460 72.727 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00740 - - pvu:PHAVU_003G061700g 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00740 12 7695879 7699768 Pte12g00740 12 7695879 7699768 RCT