Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00694 ATGGCGGTATGTGGCTCTTTAGTTAAACCAAACCAATCTCTCACTTGTCTTAGAACTCCTCCAACTTCCAATCGTATTTGCAGAAAACAGGTATCTGTAAGAGCTTCGGCAAGTAGTTCAGATGGCGGGCTGGAAAGGAAGATGATATGGAAAGAAAAAGATGGGTGGAAGATTGACTTTTCAGGTGAAAAACCAGTGACACCATTGTTGGATACTATCAACTATCCAGCTCATATGAAGAACCTATCAACTCAGGACCTTGAACAACTAGCTGCAGAGCTGAGAGCAGATATTGTGCACACTGTATCAAACACAGGTGGGCATCTCAGCTCAAGCTTAGGAGTTGTGGATTTGGCTGTGGCTATACATCATGTTTTTAACACCCCTGAAGACAGAGTCATTTGGGACGTTGGCCACCAGGCATACCCACATAAGATTCTCACTGGACGAAGATCAAAGATGCATACTATCAGAAAAACTTCAGGGCTAGCAGGTTTTCCTAAAAGGGATGAGAGCATTTATGATCCTTTCGGTGCTGGACACAGTTCTACAAGCATCTCCGCTGGTCTTGGTATGGCTGTCGCGAGAGATTTACTAGGAAAGAAGAACAATGTAATTTCGGTGATTGGAGATGGAGCCATGACAGCAGGTCAAGCATACGAGGCTTTGAATAATGCAGGCTACCTTGATGCAAATTTAATTGTCATACTCAATGACAACAAGCAGGTCTCTTTGCCAACAGCTACTCTTGATGGCCCTGCAACTCCAGTTGGAGCTTTAAGCAGTTCATTAAGCAAGCTTCAAGCAAGCACCAAGTTCCGCAAACTTAGGGAAGCTGCAAAAAGCATTACAAAGCATATAGGAGGACAAACACATCAGGTTGCAGCAAAAGTAGATGAATATGCAAGGGGTATGATCAGTGCGTCAGGGTCTACACTCTTTGAGGAACTTGGATTATATTACATCGGCCCTGTAGATGGGCATAATGTTGAAGACCTAGTGACGATTTTCCAAAAGGTGAAAGCCATGCCAGCCCCAGGTCCAGTTTTGATTCATGTTGTGACTGAAAAAGGAAAAGGGTATCCTCCAGCAGAAGCAGCAGCTGACAAAATGCATGGGGTTGTCAAGTTTGATCCCAGAACCGGTCAGCAGTTCAAGTCCAAGTCTCCAACACTCTCGTACACTCAATATTTTGCTGAAGCTTTGATAAAAGAAGCTGATATAGACAACAAGGTTGTAGCCGTTCATGCAGCGATGGGTGGGGGCACAGGTCTCAACTTTTTCCAGAAAAAGTTTCCAGACCGCTGCTTTGATGTGGGGATAGCTGAGCAACATGCTGTTACTTTCGCTGCTGGTTTAGCTACAGAGGGCTTAAAGCCATTCTGTGCTATCTATTCATCATTCCTGCAACGAGGATACGATCAAGTGATACATGATGTAGACCTCCAGAAGTTACCTGTTCGATTTGCAATGGATCGAGCTGGATTGGTGGGTGCAGATGGACCAACACATTGTGGAGCATTTGACATTACATACATGGCTTGCTTGCCCAACATGGTGGTCATGGCACCATCTGATGAAGCTGAACTAATTCACATGGTTGCAACAGCAGCAGCTATAGATGATAGACCGAGCTGCTTTAGGTATCCAAGGGGCAATGGAATTGGAGTAGCCATTCCACCCAACAGTAAAGGCACTCCACTTGAGATAGGGAAGGGAAGAATACTGGTAGAAGGTAGTAGAGTTGCTCTTCTGGGTTATGGTTCTATTGTTCAGCAATGCATGGAAGCAGCAAATATGCTTCGAACACGAGATGTCTATGTGACGGTAGCAGATGCTAGGTTTTGCAAACCTTTGGATACTGATCTCATCAAGCAATTAGCAAAGGAGCATGAAGTTCTTATTACTGTAGAGGAGGGATCCATTGGGGGCTTTGGTTCACATGTATCACACTACTTGAGCTTGGCTGGTATCCTTGATGGACCATTGAAGTTGAGAGCCATGGTGCTTCCTGATAGATACATTGACCATGGATCACATCAAGATCAGTTTGAAGAAGCAGGATTATCCTCAAAGCATATTGCTGCAACAGTCTTGTCACTATTGGGAAGGACAAAAGAAGCTCTTCAGTTTAAGTGA 2139 0.4446 MAVCGSLVKPNQSLTCLRTPPTSNRICRKQVSVRASASSSDGGLERKMIWKEKDGWKIDFSGEKPVTPLLDTINYPAHMKNLSTQDLEQLAAELRADIVHTVSNTGGHLSSSLGVVDLAVAIHHVFNTPEDRVIWDVGHQAYPHKILTGRRSKMHTIRKTSGLAGFPKRDESIYDPFGAGHSSTSISAGLGMAVARDLLGKKNNVISVIGDGAMTAGQAYEALNNAGYLDANLIVILNDNKQVSLPTATLDGPATPVGALSSSLSKLQASTKFRKLREAAKSITKHIGGQTHQVAAKVDEYARGMISASGSTLFEELGLYYIGPVDGHNVEDLVTIFQKVKAMPAPGPVLIHVVTEKGKGYPPAEAAADKMHGVVKFDPRTGQQFKSKSPTLSYTQYFAEALIKEADIDNKVVAVHAAMGGGTGLNFFQKKFPDRCFDVGIAEQHAVTFAAGLATEGLKPFCAIYSSFLQRGYDQVIHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELIHMVATAAAIDDRPSCFRYPRGNGIGVAIPPNSKGTPLEIGKGRILVEGSRVALLGYGSIVQQCMEAANMLRTRDVYVTVADARFCKPLDTDLIKQLAKEHEVLITVEEGSIGGFGSHVSHYLSLAGILDGPLKLRAMVLPDRYIDHGSHQDQFEEAGLSSKHIAATVLSLLGRTKEALQFK* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00694 712 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 391 559 - -
Pte12g00694 712 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 72 702 IPR005477 GO:0008661|GO:0016114
Pte12g00694 712 ProSitePatterns Transketolase signature 1. 95 114 IPR005474 -
Pte12g00694 712 SUPERFAMILY TK C-terminal domain-like 566 702 IPR009014 GO:0003824
Pte12g00694 712 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 70 355 IPR005477 GO:0008661|GO:0016114
Pte12g00694 712 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 389 580 IPR029061 -
Pte12g00694 712 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 66 454 IPR029061 -
Pte12g00694 712 Gene3D - 571 703 IPR009014 GO:0003824
Pte12g00694 712 Gene3D - 392 560 - -
Pte12g00694 712 ProSitePatterns Transketolase signature 2. 498 514 IPR020826 -
Pte12g00694 712 Pfam Transketolase, pyrimidine binding domain 392 553 IPR005475 -
Pte12g00694 712 Pfam Transketolase, C-terminal domain 571 694 IPR033248 -
Pte12g00694 712 CDD TPP_PYR_DXS_TK_like 398 551 - -
Pte12g00694 712 Gene3D - 63 364 - -
Pte12g00694 712 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 69 703 IPR005477 GO:0008661|GO:0016114
Pte12g00694 712 SMART Transket_pyr_3 392 557 IPR005475 -
Pte12g00694 712 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 571 703 - -
Pte12g00694 712 CDD TPP_DXS 106 361 IPR005477 GO:0008661|GO:0016114
Pte12g00694 712 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 25 709 IPR005477 GO:0008661|GO:0016114
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00694 Pte-Chr12 6962768 6967241 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00694 K01662 - cave:132171057 1252.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00694 12 6962768 6967241 Pte12g00694 12 6962768 6967241 RCT