Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00669 ATGAATTCCTCGTTGCCCTCTTGTATTACACAGCAAGATGACTCTGGTATTGATGGAGTTGTTTCTTCCCGTGGCTCTGAGGGAAATGGATCTCCATCAAGTTCAGTTTCCAAAACCCTAGAGGGCTTTCAAATGCTTCAGTCAAATCGACTTGGGTCTGTACCTGATCACACTCCTGGCACGGAATCCCAATGTGGAATTTCAACATCTGATCAGACTCTAGATGGATGTTGTTCTCCAGTTAGAAGTGAAGCCCAAGCTCCAGATTTGACGAATTCTGATGTTTGGGAGGAAGAAATTGCATGCCGCGATTCAGAGCCTTCTTCTCCTTTCCAATTCACTGATAATGATTTATTGCCAGATTCTTCTTCGAGCTTGTGGGATTCTGCTTCCCGGGACATGCCGTTGTCATCTTCAAAATACTGGCCTCCATGGTCTCGAAATGTTCAAGGTTTATGGAATTCTCTGCCTCGCCCAGAAGAATACTGTCCTCAAGTTTCCGATTCAGTACCACTTCCAGAAGAAATTGATGCTCCTCTGACCTTTTCGTTTTCAACCGGTCCCCTTGTGCCTACCATGTTGGGTGCTGGTCTTAGGAACCTCGGAAACACATGCTTTCTCAATGCAGTCTTACAGTGTTTAACGCACACTGTATTGTTGGTGAACGGAGTTCGTTCGTGCAACCATTCTTCTCCGTGTGGTGATAGTGAAGGGTTTTGTGTTCTTTGTACTCTCCGTGAGCATATTGAGCTTTCGTTATCTTGTTCAGGGGGAGTTCTCTCGCCTGTCAAACTAGTCGAAAACTTAAATTATATTTCATCTGATTTTAGAAGATACCAGCAGGAGGATGCACACGAATTCTTGCACTGTTTCTTAGAGAAATTAGATGAATGTTTCACTCATCCTGAAATGAAGGGAAATAACTCTTCTCGAGATGACAATTTAGTAGAGCAGATATTTGGTGGTCAACTTATTAGCAGACTTCAATGCTCTAACTGTGGTCACCGTTCTGATACTCACGAGCCTCTGATTGACCTGAGCTTGGAGATTGAGGATGTGGATACCCTTTCAAGTGCCTTAGAATCTTTCACGAAGGTTGAAAATATCGATGGAAAGTTTAGATGTGAGAACTGCAAGGAGGAAGTATCAATGGTGAAGCAGTTTATGTTGAATAAGGCACCTTCAGTTGCTGCATTTCAATTTAAAAGATTCAAGACTCTGGAGTCATTTGTGGAGAAGGTGGATAAGCATGTCCAATTTCCATTGGAGTTGGACTTGTATCCGTACACCATGGATTGTCAGAATAATGCAACCTTGAAATATGACCTCTATGCGATACTGGTACATGTTGGATATTCATCTTCCTCTGGCCATTACTTTTCGTTTGTACGATCCTCCCCTGATACATGGCACAGACTGGATGATTCATTGGTCACAAGGGTTGGAGATGATTATGTGTTGTCTCAGAATGCATATATGCTATTTTATACCAAGCGTGGCACACCTTGGTTTTCAAGTATCATGGAAGCTCTAAAGTCATGCCAGAATCCAAGTGGTTTCAGTACCTCACCAACATCAGTTTTAGATGCTGACGTTGTAGCTTGCTCAGATTCTGGTGGAGCACATGTTAAGGATTGTGATGCTAATGATGTAATAGAGGCTGATGAACATGGTGAAAAGATTGGTGAATCTAGCATCAACAATTGTCTGGATACTGATCACGACTTATCTGGACAGGTTGCCTCTGAAACAATGCAGATGAATGCTGCCCCCAAAAATGATGGCCATCAAGAGATTGATAGTACCGGAGAGAATGACACGTTCCATCCTTTAACTCCACCTAGGTCCCCTAGTCCAGATTTGTGTTCTCCAGGTACAACTAATTTTTCAATCCCTCGTAACCACCTGAAGTTTGAAAATGACCGTAGTTGTGATAGATCATCAAGCAAAATTGTTGAAGATTTTGAGAGAAAGGAGGCTGTTAGATATCTTAAGAAGAGTAGCATTCCTTGTTCCAGGCGCAAACAGAAACTAATGGAGGCAATGCCTGCACACCAGCGAGATGGCTCTGCAAAAAAGAGAAATAAGAAAGTCGATTCTCCACAGTCCAACATTCTTCCTTCTCGCCAAAGATCACACCATAGATCTGTCGTGCGTCCTGTAGCTGCTGCAAGTTTACGTTGA 2184 0.4286 MNSSLPSCITQQDDSGIDGVVSSRGSEGNGSPSSSVSKTLEGFQMLQSNRLGSVPDHTPGTESQCGISTSDQTLDGCCSPVRSEAQAPDLTNSDVWEEEIACRDSEPSSPFQFTDNDLLPDSSSSLWDSASRDMPLSSSKYWPPWSRNVQGLWNSLPRPEEYCPQVSDSVPLPEEIDAPLTFSFSTGPLVPTMLGAGLRNLGNTCFLNAVLQCLTHTVLLVNGVRSCNHSSPCGDSEGFCVLCTLREHIELSLSCSGGVLSPVKLVENLNYISSDFRRYQQEDAHEFLHCFLEKLDECFTHPEMKGNNSSRDDNLVEQIFGGQLISRLQCSNCGHRSDTHEPLIDLSLEIEDVDTLSSALESFTKVENIDGKFRCENCKEEVSMVKQFMLNKAPSVAAFQFKRFKTLESFVEKVDKHVQFPLELDLYPYTMDCQNNATLKYDLYAILVHVGYSSSSGHYFSFVRSSPDTWHRLDDSLVTRVGDDYVLSQNAYMLFYTKRGTPWFSSIMEALKSCQNPSGFSTSPTSVLDADVVACSDSGGAHVKDCDANDVIEADEHGEKIGESSINNCLDTDHDLSGQVASETMQMNAAPKNDGHQEIDSTGENDTFHPLTPPRSPSPDLCSPGTTNFSIPRNHLKFENDRSCDRSSSKIVEDFERKEAVRYLKKSSIPCSRRKQKLMEAMPAHQRDGSAKKRNKKVDSPQSNILPSRQRSHHRSVVRPVAAASLR* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00669 727 MobiDBLite consensus disorder prediction 1 69 - -
Pte12g00669 727 MobiDBLite consensus disorder prediction 672 727 - -
Pte12g00669 727 SUPERFAMILY Cysteine proteinases 196 498 IPR038765 -
Pte12g00669 727 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 197 212 IPR018200 GO:0004843|GO:0006511
Pte12g00669 727 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 196 499 IPR028889 -
Pte12g00669 727 FunFam Ubiquitin carboxyl-terminal hydrolase 20 192 502 - -
Pte12g00669 727 Pfam Ubiquitin carboxyl-terminal hydrolase 197 496 IPR001394 GO:0004843|GO:0016579
Pte12g00669 727 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 75 499 - -
Pte12g00669 727 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 441 459 IPR018200 GO:0004843|GO:0006511
Pte12g00669 727 MobiDBLite consensus disorder prediction 591 626 - -
Pte12g00669 727 MobiDBLite consensus disorder prediction 678 699 - -
Pte12g00669 727 Gene3D Cysteine proteinases 195 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00669 Pte-Chr12 6599924 6603824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00669 191 498 Miscellaneous Gene Families AT4G31670 33.123 6.49e-47 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00669 K11855 - cave:132176464 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00669 12 6599924 6603824 Pte12g00669 12 6599924 6603824 RCT