Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00660 ATGGGGAAGAAGAAATCTAAGGAAGGAGGAGAAACCACAAAAACTGAAGTTTTACCTCCTTCCAGTGACATTTTTAAAACCCTATTTGGCGAAGTTGCGGAACAGAATGCAACTTCTCTATTCTCAGATGATAACCCATTTCGAAGGAAGCCTCAAAATTCCACATTTGAATCGAGTAGACCTTTGGAAAACCCTAGTAATGTTGGACCCGGAATCCAAGACCTGACCGAGCGGAACAGGAAGAAAAGGGGCAAAGACAAGATGTTCAATTCTGATTTGGATTATGAAGTTGCAGCTTCGGAGAAAATTAAAAAATTGAAGAAGGTGCGGAGTTCTGATTTGGGTTCTCAATTGGGTGTGGAAGCTAAGGAAGACAACGTGGGGAATGCAAATATGGGGGAAGAATTGAATGGGGTGGAGAAGGATAAGCATAAGAGGAAGAGGAAGAGAGATGAGATTGAGAGGGAATATGAGGTAAGGAAGTATGGGGTTGAGGAAAATGAGGAGGAAAGTCCTAGAGGAGAAGTTGTTGGGAGCAAAAGGAAGACGTTGGATAATCCAGCTGATATGATGGTTTCTAAGGAAGGTTTTGATGATGAGAGTAAGCTCTTGAGAACTATATTTGTTGGGAATTTGCCTCTCAAAATAAAAAAGAAGACCTTGTTGAAGGAGTTCAAGAAATTTGGGGAGGTGGAATCTGTGAGGATTCGTTCTGTGCCAATATCAGATACTAAAACACCGAGAAAAGGAGCCATCCTTTCCAAGAAAATCAATGATGCTGTTGACTGCGTGCATGCATACATTGTATTTAAATCAGAAGAATCTGCTCAGGCTTCTTTGGTTTACAATATGGCCGTGGTTGAAGGAAATCATATTCGTGTAGACAGGGCATGCCCACCCCGCAAGAAACTTAAAGGGGACAGTGCTTCGATATATGATACAAAGAGAACTGTATTTGTGGGAAATCTCCCGTTTGATGTCAAGGATGAAGAACTTTATCAGTTGTTCTGTGGCATACCCAACCTGAAATCAAGTGTAGAAGCTATTAGGGTGATCAGAGATCCAAACAATAGTGTCGGAAAGGGCATTGCATATGTCTTGCTCAAAACCAGAGAAGCTGTGAATTCAGTCCTCAAAAGAAGGAATTTGAAGTTGCGAGAGAGGGAGCTGAGGCTTTCCCATGCCAAATCTAATCCATCCCCATCTGCAAAACCGAAACCAGCTACTGCACCTGCGACTTCTGCCAATACCCCTTCAAACAAGTTTGCTTCAAATTCTAGACCATTTTCAGGCAGTGAGGACAAACCAAAAAGAAAGCTCAATATGAACTACCAGGGTGTGAAGGCTACCAAGAACACTTCTGCCAAAAAACCGAAAAGTCAGATTGGAGATATGCAAAATGAACGCAAGATGAAAAGGCCAGCAGTTGCTGCTAGGAAGGCAAAAGGGAAATTGCTCAAAGATGGTGCTCCAAAACAAGCAGGGGCAAAGCGGAAGTTTGATAACCGCACTCCAGAAAGCTCCCAATACAAAAAGTCAAGAAAGCTAGGATGTGATGATTTGAACTGTGAAAGTAAACCTAATAGTATCTCAAGTACCGGAATAGTTTTTTAG 1614 0.4207 MGKKKSKEGGETTKTEVLPPSSDIFKTLFGEVAEQNATSLFSDDNPFRRKPQNSTFESSRPLENPSNVGPGIQDLTERNRKKRGKDKMFNSDLDYEVAASEKIKKLKKVRSSDLGSQLGVEAKEDNVGNANMGEELNGVEKDKHKRKRKRDEIEREYEVRKYGVEENEEESPRGEVVGSKRKTLDNPADMMVSKEGFDDESKLLRTIFVGNLPLKIKKKTLLKEFKKFGEVESVRIRSVPISDTKTPRKGAILSKKINDAVDCVHAYIVFKSEESAQASLVYNMAVVEGNHIRVDRACPPRKKLKGDSASIYDTKRTVFVGNLPFDVKDEELYQLFCGIPNLKSSVEAIRVIRDPNNSVGKGIAYVLLKTREAVNSVLKRRNLKLRERELRLSHAKSNPSPSAKPKPATAPATSANTPSNKFASNSRPFSGSEDKPKRKLNMNYQGVKATKNTSAKKPKSQIGDMQNERKMKRPAVAARKAKGKLLKDGAPKQAGAKRKFDNRTPESSQYKKSRKLGCDDLNCESKPNSISSTGIVF* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00660 537 SUPERFAMILY RNA-binding domain, RBD 204 303 IPR035979 GO:0003676
Pte12g00660 537 MobiDBLite consensus disorder prediction 75 90 - -
Pte12g00660 537 MobiDBLite consensus disorder prediction 37 90 - -
Pte12g00660 537 CDD RRM2_RBM34 317 393 IPR034221 -
Pte12g00660 537 SMART rrm1_1 206 295 IPR000504 GO:0003723
Pte12g00660 537 SMART rrm1_1 317 393 IPR000504 GO:0003723
Pte12g00660 537 MobiDBLite consensus disorder prediction 392 537 - -
Pte12g00660 537 MobiDBLite consensus disorder prediction 37 73 - -
Pte12g00660 537 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 296 443 - -
Pte12g00660 537 SUPERFAMILY RNA-binding domain, RBD 310 404 IPR035979 GO:0003676
Pte12g00660 537 Coils Coil 136 156 - -
Pte12g00660 537 Gene3D - 308 417 IPR012677 -
Pte12g00660 537 MobiDBLite consensus disorder prediction 1 21 - -
Pte12g00660 537 MobiDBLite consensus disorder prediction 445 461 - -
Pte12g00660 537 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 299 IPR000504 GO:0003723
Pte12g00660 537 MobiDBLite consensus disorder prediction 395 430 - -
Pte12g00660 537 MobiDBLite consensus disorder prediction 481 521 - -
Pte12g00660 537 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 389 IPR000504 GO:0003723
Pte12g00660 537 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 248 IPR000504 GO:0003723
Pte12g00660 537 CDD RRM1_RBM34 205 295 - -
Pte12g00660 537 Gene3D - 71 307 IPR012677 -
Pte12g00660 537 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 316 397 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00660 Pte-Chr12 6516071 6519338 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00660 K14837 - qsa:O6P43_033336 545.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00660 12 6516071 6519338 Pte12g00660 12 6516071 6519338 RCT