Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00651 ATGGAGATAAAAACTGTTAAAGTCAGTAACGTTTCCTTGGGAGCAACTGAGCGTGACTTGAAGGAATTTTTTTCCTTTTCTGGTGACATTGGACACGTTGAGATGAGGAGTGACACTGAGCGGTCTCAAGTGGCATATGTCACGTTCAAAGATGGACAAGGAGCTGAGACCGCTGTGCTTCTTTCAGGGGCAACCATTGTTGATCAATCAGTCACCATAACTTTGGATCCAGATTATGAACTTCCACCTGCTGCCTTGGCAGCAGAAAGGGGAAATGGTGATGGTGCTGACTCAGCTCTTCGAAAGGCTGAGGATGTGGTCAGCAGTATGCTTGCAAAGGGATTCATTTTAGGAAAAGATGCTGTGAATAAAGCAAAAACATTTGATGAGAAGCACAGATTGTCTTCAACAGCTTCAGCAAAAGTTGTGTCCTTCGACCAGAAGATTGGTTTGAGTGAGAAGTTAAGTGTTGGTGCTTCAGCGGTGGGTGGTAAAGTCCGAGAAGTTGATCAGAAGTTTCAAGTTTCGGAGAAAACAAAATCAGCATTTGCAGCTGCAGAGCAGAAAATCAGTAGCGCTGGTTCTGCCATAATGAATAATAGGTATGTATTTACTAGTGCTTCTTGGGTTACAAATGCTTTCAATAAAGTTGCAAAGGCAGCTGGAGATGTTGGGCAGAAGACCAAAGAGAAAGTTGACATGGCAGACGAGGAAGAGAAAAGGAAAGTGGAGGATCAATATGCACAGGTTCTCTCCGACTCCCCAAAAGCATCTGCACCAAAGGAATCGCATCCTCATAAGCCTACAATCCTTTGA 816 0.44 MEIKTVKVSNVSLGATERDLKEFFSFSGDIGHVEMRSDTERSQVAYVTFKDGQGAETAVLLSGATIVDQSVTITLDPDYELPPAALAAERGNGDGADSALRKAEDVVSSMLAKGFILGKDAVNKAKTFDEKHRLSSTASAKVVSFDQKIGLSEKLSVGASAVGGKVREVDQKFQVSEKTKSAFAAAEQKISSAGSAIMNNRYVFTSASWVTNAFNKVAKAAGDVGQKTKEKVDMADEEEKRKVEDQYAQVLSDSPKASAPKESHPHKPTIL* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00651 271 SUPERFAMILY RNA-binding domain, RBD 3 80 IPR035979 GO:0003676
Pte12g00651 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Pte12g00651 271 MobiDBLite consensus disorder prediction 225 247 - -
Pte12g00651 271 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 4 239 - -
Pte12g00651 271 SMART rrm1_1 5 74 IPR000504 GO:0003723
Pte12g00651 271 FunFam RNA recognition motif-containing protein 1 74 - -
Pte12g00651 271 MobiDBLite consensus disorder prediction 225 271 - -
Pte12g00651 271 Gene3D - 1 74 IPR012677 -
Pte12g00651 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 66 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00651 Pte-Chr12 6376703 6380604 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00651 - - pmum:103336853 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00651 12 6376703 6380604 Pte12g00651 12 6376703 6380604 RCT