Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00594 ATGGCGGGTGAAAAGTTTCAACCGAGTCCATCATCAACCGGTGCTGAATCATACATCGGTTCCTTCATAAGCCTTATTTCAAAGTCTGAGATTCGCTATGAAGGCGTTCTTTGTCATCTCGATGTGGCTACTTCCACCATTGGCTTGAAAAACGTTAGGTCTTACGGAACGGAGGGACGAAAGAAGGATGGTCCCCAGGTTCTTCCTGCCTCAAAGATATTCGACTTCATTCTCTTTCGAGGAGCTGACATTAAGGACTTGCAGGTTAAGTCCACTCCACTAAAGGAAGAAGAACAGATATACAATGATCCTGCAATCATCCAATCAAACTGTTCCGCAAGGCCTTTGAATTCCTCTACATCAGCTTTTGCTGGCGGGAAAGTTATGGGAGAACCCATCCAAGGGCACAACATACCTGCTCTTACCAGCAGAGCCGTTCCTAAGAGTTCCATGCATTTTCAACCACTACCTTCAATGTTCTCTCTGCCAACCTTGGAGAATCGGATGCCGTCATCTGAAGTTCAGTTTCCTACAGTCAGAGGTCCCTTGCCAGCTGCCCAAGCTGCAGACATATTTGTACAACCTGGTTTACCATATTCAGCACAAAGTAAGACCCGTGATGAATGGGTAGCCAGCACATCAATGCCAGAATCTCATTCTTCCCCTCCATTGATTTCTCTGCAAGCGTCTACAGGACCAATGCTTCCATTGCCATTTTCAATGCAACAGTCTCCATACTCTACTCCACAATTCACAGAAGAGTTTGATTTTGATGCAATGAATGAGAAGTTCAAAAAGGATGAAGTATGGGGTAGCCTTGGAAAGGCAAGTGAGAAAATAGATGGTCATCAGGACAATCTCTCCAGTAGCAATCTGGGTGACAGAGGCCAAGGACTGCTTCCAAATCCCAAGGTTGCGTATAATAAAGATGATTTTTTTGATACAATTTCTTGTCAATCACTGAATCGTGGAGCTAGGAATGGGAGGATTCGATCATTTGAGAGAATGAGGCAGAATACTGAGACATTTGGAAATATCTTGCAGAGGTCTGATAATGATTATAGCAGCTACAATGATGGACGAGGTATGCAGTATAGAGATTCGTTTAATGGGAGAGGATGCTATGGATATAATGGATTTCCTTCTTCCTAG 1152 0.4392 MAGEKFQPSPSSTGAESYIGSFISLISKSEIRYEGVLCHLDVATSTIGLKNVRSYGTEGRKKDGPQVLPASKIFDFILFRGADIKDLQVKSTPLKEEEQIYNDPAIIQSNCSARPLNSSTSAFAGGKVMGEPIQGHNIPALTSRAVPKSSMHFQPLPSMFSLPTLENRMPSSEVQFPTVRGPLPAAQAADIFVQPGLPYSAQSKTRDEWVASTSMPESHSSPPLISLQASTGPMLPLPFSMQQSPYSTPQFTEEFDFDAMNEKFKKDEVWGSLGKASEKIDGHQDNLSSSNLGDRGQGLLPNPKVAYNKDDFFDTISCQSLNRGARNGRIRSFERMRQNTETFGNILQRSDNDYSSYNDGRGMQYRDSFNGRGCYGYNGFPSS* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00594 383 ProSiteProfiles DFDF domain profile. 243 279 IPR025762 -
Pte12g00594 383 ProSiteProfiles FFD box profile. 305 320 IPR025761 -
Pte12g00594 383 SMART FDF_2 249 347 IPR019050 -
Pte12g00594 383 Pfam Scd6-like Sm domain 18 91 IPR025609 -
Pte12g00594 383 CDD LSm14_N 15 89 IPR025609 -
Pte12g00594 383 SMART LSM14_2 14 111 IPR025609 -
Pte12g00594 383 Pfam FDF domain 250 345 IPR019050 -
Pte12g00594 383 PANTHER SCD6 PROTEIN-RELATED 12 232 - -
Pte12g00594 383 SUPERFAMILY Sm-like ribonucleoproteins 17 93 IPR010920 -
Pte12g00594 383 Gene3D - 9 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00594 Pte-Chr12 5349018 5353535 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00594 K18749 - qsa:O6P43_025019 192.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00594 12 5349018 5353535 Pte12g00594 12 5349018 5353535 RCT