Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00555 ATGACGGACTTGGCCTCATTCCCTCCAATTGAACCTACGAGTTTCGATCTCATTATCGTTGGCACCGGTCTGCCGGAATCCGTAATCTCCGCCGCTGCTTCCGCTGTAGGAAAAACTGTCCTCCACCTCGACCCCAATCCATTCTATGGAAGCCACTTCGCTTCTCTATCGCTTGAAGAATTCACCTCTTTCCTCAATTGTTCCCATCCCACCTCTTCTCCCCCTTCTGTTTCAGAAGATAACGATGTCGCCGCAGTAGACCTGACCACCCGATCTATATACTCAGATGTCGAGATTTCCTCTTATACTCACAGTGACGACAATATTTTACAAGAAAATTCCAGAAAATTCAATCTTGATTTGGACGGACCTAGAGCTTTGTTTTGTGCAGACAAGTCCATAGAGCTCTTATTGAAATCTGGTGCTAGTCAGTACCTGGAGTTTAAAAGCATCGATGCAAGCTTCATCTCCGATGGCAATGGAGATCTGGCTAGCGTGCCGGACTCTCGAGCCGCCATTTTTAAGGATAAGAGTTTGAAACTTACAGAGAAGAATCAGATGATGAGGTTCTTTAAGTTAATTCAGCAGCATCTAGCTGCTGCTTCTGACGGAAATGGCGATGAGAGTAGTGAAAGTTTGAAGATTTCGAAGGAGGATCTGGAGAGTCCCTTTGTTAGTTTCTTGGACAAAATGCGATTGCCGCCAAAGATAAAATCGATTATACTATATGCTATAGCTCTAGAAGATTATGATCAGGAAAATGGTGCGGTCTGTAAGGTTGCACTCAAGACGAAAGATGGGGTAGATCGTCTAGCTCTTTATAGTGCATCTATTGGCAGGTTCTCAAATGCTCCAGGGGCATTAATTTATCCTGTATATGGTCAAGGGGAACTACCACAAGCCTTTTGCCGTCGTTCTGCTGTTAAAGGTTGCATTTACGTTTTGAGAATGCCAGTAACTTCACTGCTTATGGATGAGGGTTCTGGAGACTTTAAGGGTGTCAGGTTAGCTTCAGGCCAGAATTTATATGCCCAACGGTTACTTCTAGATCCATCCTTTAAAGTACCATTTCAATGGGCGTCATCTTCCATTGATCCTCGGAAAGGGAATCTTCAAACATCTAGCAGAAGAGACTTTGTAGGGATGGTGGCAAGAGCGATATGTATCACAAAGAATTCCCTGAAACAAGATGTATCAAATTGTTTGGTAGTATATCCTCCTAGATCTTTGCATCCTGAGCAAATTACATCAATAAGAGCTCTCCAGATAGGGGAAAATCTTGCTGTTTGTCCCCCTGGCACGTTTGTGGTTTACTTTTCCACTTTATGTTCGGATGCCAATGAGGGGAAAAAGTGGTTAAATGCAGGCATGAATGCTCTCTTTACTTTTCCTGCTCATGAGGATCCTGAAAGTGTTCCTGCAGGTGAAAATGAGACTGAAAAAGCAAAACCAGCTGTGATCTGGAGCGCAAGTTATATTCAGGCGTTAATTGTGAGTCATCCTGGATCTGTCAGCTCGACTCCTTCACCAGATGGAAATCTGAACTACGACAACCTCTCAGATACAGCTATGAAGCTATTTCATATGATGTATCCGGGGGAAGAATACTTTCCAGAGACGACCTCACCAAAGAATCCTGATGATGATGGCTTTGATCATGAGAATTGA 1668 0.4365 MTDLASFPPIEPTSFDLIIVGTGLPESVISAAASAVGKTVLHLDPNPFYGSHFASLSLEEFTSFLNCSHPTSSPPSVSEDNDVAAVDLTTRSIYSDVEISSYTHSDDNILQENSRKFNLDLDGPRALFCADKSIELLLKSGASQYLEFKSIDASFISDGNGDLASVPDSRAAIFKDKSLKLTEKNQMMRFFKLIQQHLAAASDGNGDESSESLKISKEDLESPFVSFLDKMRLPPKIKSIILYAIALEDYDQENGAVCKVALKTKDGVDRLALYSASIGRFSNAPGALIYPVYGQGELPQAFCRRSAVKGCIYVLRMPVTSLLMDEGSGDFKGVRLASGQNLYAQRLLLDPSFKVPFQWASSSIDPRKGNLQTSSRRDFVGMVARAICITKNSLKQDVSNCLVVYPPRSLHPEQITSIRALQIGENLAVCPPGTFVVYFSTLCSDANEGKKWLNAGMNALFTFPAHEDPESVPAGENETEKAKPAVIWSASYIQALIVSHPGSVSSTPSPDGNLNYDNLSDTAMKLFHMMYPGEEYFPETTSPKNPDDDGFDHEN* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00555 555 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 92 496 - -
Pte12g00555 555 SUPERFAMILY FAD-linked reductases, C-terminal domain 381 495 - -
Pte12g00555 555 PIRSF Rab_ger_ger_transf_A_euk 76 555 IPR001738 GO:0005968|GO:0006886|GO:0018344
Pte12g00555 555 PIRSF Rab_ger_ger_transf_A_euk 1 109 IPR001738 GO:0005968|GO:0006886|GO:0018344
Pte12g00555 555 PRINTS Rab GDI/REP protein family signature 183 198 IPR018203 GO:0005092|GO:0007264
Pte12g00555 555 PRINTS Rab GDI/REP protein family signature 133 149 IPR018203 GO:0005092|GO:0007264
Pte12g00555 555 PRINTS Rab GDI/REP protein family signature 16 34 IPR018203 GO:0005092|GO:0007264
Pte12g00555 555 PRINTS Rab GDI/REP protein family signature 34 51 IPR018203 GO:0005092|GO:0007264
Pte12g00555 555 PRINTS Rab GDI/REP protein family signature 294 315 IPR018203 GO:0005092|GO:0007264
Pte12g00555 555 SUPERFAMILY FAD/NAD(P)-binding domain 12 356 IPR036188 -
Pte12g00555 555 MobiDBLite consensus disorder prediction 536 555 - -
Pte12g00555 555 Pfam GDP dissociation inhibitor 113 458 IPR018203 GO:0005092|GO:0007264
Pte12g00555 555 Pfam GDP dissociation inhibitor 14 93 IPR018203 GO:0005092|GO:0007264
Pte12g00555 555 PANTHER RAB GDP-DISSOCIATION INHIBITOR 11 540 IPR018203 GO:0005092|GO:0007264
Pte12g00555 555 FunFam Rab proteins geranylgeranyltransferase component 166 287 - -
Pte12g00555 555 MobiDBLite consensus disorder prediction 541 555 - -
Pte12g00555 555 Gene3D - 12 536 IPR036188 -
Pte12g00555 555 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 166 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00555 Pte-Chr12 4968733 4973463 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00555 K23460 - jre:108984898 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00555 12 4968733 4973463 Pte12g00555 12 4968733 4973463 RCT