Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00480 ATGTTTTCTTTGAATGAAATGGGGATGACCCCAGCAGCATCAACCATGTTTTCTGCCTATGCTTCATTGGCAGCTTTGATGATGTTTGTTCGCTCAGTGCTGAATGAGCTTTCAGGTTTGGTCCCTGATTCATTTCGTACATACATAACGGACCTTCTTGAGAAGCTCTTCAAGCCTCCTTCTAAAGATCTCACGCTTCTCATTGATGAGAGTGCTGGCATGGCAAACAACCAGGTCTTCCAGGCTTCCGAGATTTATCTCAGAACCAAGGTCAACGTCCCTTCCACACAACGCTTGCGTGTCAGCAAAACTGAGCGCCAGAAGGTTATAACCGTAGCCATCGACAACAACGAGGAGATCATCGATTCCTTTGACAATATTGAGCTAAAATGGCGTTTGGTCTGTACTGAGCCCAAGAAAGATTCCTATTCCAAAGAAAAATATCATTTTGAGCTGACTTTCCATAAGAGATTTAAGGACAAGGTGGTGGGTTCTTATCTCCCGTTTATTTTGACAAAGGCTAAAGATATCAAAGAGAAAGAGAAAGTGGTGAAGATTTACAACAGGGACTGTCCTTACGATGATGAAGATGGGGGGAGTGGTCAATGGGGTGGTGTTAATTTAGAGCACCCATCTACGTTTGACACACTTGCCATGGACCCAGAATTGAAGAAGTTCATTATTGATGATTTAGACAGGTTTGTGAGGAGGAGAGAATTCTACAAGAGAGTCGGTAAGGCTTGGAAAAGAGGGTATTTGCTGTACGGTCCACCTGGAACTGGCAAATCAAGCTTGGTAGCTGCCATGGCTAATTACCTCAAGTTTGATATCTATGATTTGGAGCTCAGCAGTATATACTCCAACTCTGATCTCAGACGAACAATGTTGTCCACCACCAACCGGTCCATTGTGGTGATTGAAGATATTGATTGCAGTCCATTGACACATGATCGAGATGAAGCTGATCAATGCGACTCACCACTCAACACTAAGCTGACACTGTCAGGTTTGTTGAATTTCATTGATGGATTGTGGTCAAGTTTTGGAGATGAAAGAATCATTGTGTTCACAACAAACCACAAGGAAAGGCTTGACCCTGCATTGCTACGCCCTGGTAGAATGGATGTGCACATCAACATGTCATATTGCACAGTTCAAGGCTTGAAGTTCTTAGTATCTAATTACCTTGGCCTGCTAGAGAACTGTGAGAGTCAATTCTATGAGGAAGCCGTAAGATTAATCGAGAGCACTACAGTGACTCCTGCTGAGGTTGCGGAGGAATTGATGAAGAGTGAGGACGCAGAGGTTGCTCTTGAACTACTTGTGAAATTCCTCAAGCCATCAACCATGTTTTCTGCCTATGCTTCATTGGCAGCTTTGATGATGTTTGTTCGCTCAGTGCTGAATGAGCTTTCAGGTTTGGTCCCTGATTCATTTCGTACATACATAACGGACCTTCTTGAGAAGCTCTTCAAGCCTCCTTCTAAAGATCTCACGCTTCTCATTGATGAGAGTGCTGGCATGGCAAACAACCAGGTCTTCCAGGCTTCCGAGATTTATCTCAGAACCAAGGTCAACGTCCCTTCCACACAACGCTTGCGTGTCAGCAAAACTGAGCGCCAGAAGGTTATAACCGTAGCCATCGACAACAACGAGGAGATCATCGATTCCTTTGACAATATTGAGCTAAAATGGCGTTTGGTCTGTACTGAGCCCAAGAAAGATTCCTATTCCAAAGAAAAATATCATTTTGAGCTGACTTTCCATAAGAGATTTAAGGACAAGGTGGTGGGTTCTTATCTCCCGTTTATTTTGACAAAGGCTAAAGATATCAAAGAGAAAGAGAAAGTGGTGAAGATTTACAACAGGGACTGTCCTTACGATGATGAAGATGGGGGGAGTGGTCAATGGGGTGGTGTTAATTTAGAGCACCCATCTACGTTTGACACACTTGCCATGGACCCAGAATTGAAGAAGTTCATTATTGATGATTTAGACAGGTTTGTGAGGAGGAGAGAATTCTACAAGAGAGTCGGTAAGGCTTGGAAAAGAGGGTATTTGCTGTACGGTCCACCTGGAACTGGCAAATCAAGCTTGGTAGCTGCCATGGCTAATTACCTCAAGTTTGATATCTATGATTTGGAGCTCAGCAGTATATACTCCAACTCTGATCTCAGACGAACAATGTTGTCCACCACCAACAGGTCCATTGTGGTGATTGAAGATATTGATTGCAGTCCATTGACACATGATCGAGATGAAGCTGATCAATGCGACTCACCACTCAACACTAAGGTCAGCACGCTGACACTGTCAGGTTTGTTGAATTTCATTGATGGATTGTGGTCAAGTTTTGGAGATGAAAGAATCATTGTGTTCACAACAAACCACAAGGAAAGGCTTGACCCTGCATTGCTACGCCCTGGTAGAATGGATGTGCACATCAACATGTCATATTGCACAGTTCAAGGCTTGAAGTTCTTAGTATCTAATTACCTTGGCCTGCTAGAGAACTGTGAGAGTCAATTCTATGAGGAAGCCGTAAGATTAATCGAGAGCACTACAGTGACTCCTGCTGAGGTTGCGGAGGAATTGATGAAGAGTGAGGACGCAGAGGTTGCTCTTGAACTACTTGTGAAATTCCTCAAGCGTAAGAGAGAGGAACGAGCAGCAACCGAAAATGAAGAATCCAAAGGGACTGTTCAAAATAAGGATGAAAAGAAAGGTAGTGAAGACGACAACGAAAAAAATCAAGGGGGTGACGTTGAAAATGAAGATCTAGCAGCTAAAAGTCAAGAACTTGAGGATAAGGCAGATAAGTATAATATCTAA 2832 0.4336 MFSLNEMGMTPAASTMFSAYASLAALMMFVRSVLNELSGLVPDSFRTYITDLLEKLFKPPSKDLTLLIDESAGMANNQVFQASEIYLRTKVNVPSTQRLRVSKTERQKVITVAIDNNEEIIDSFDNIELKWRLVCTEPKKDSYSKEKYHFELTFHKRFKDKVVGSYLPFILTKAKDIKEKEKVVKIYNRDCPYDDEDGGSGQWGGVNLEHPSTFDTLAMDPELKKFIIDDLDRFVRRREFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMANYLKFDIYDLELSSIYSNSDLRRTMLSTTNRSIVVIEDIDCSPLTHDRDEADQCDSPLNTKLTLSGLLNFIDGLWSSFGDERIIVFTTNHKERLDPALLRPGRMDVHINMSYCTVQGLKFLVSNYLGLLENCESQFYEEAVRLIESTTVTPAEVAEELMKSEDAEVALELLVKFLKPSTMFSAYASLAALMMFVRSVLNELSGLVPDSFRTYITDLLEKLFKPPSKDLTLLIDESAGMANNQVFQASEIYLRTKVNVPSTQRLRVSKTERQKVITVAIDNNEEIIDSFDNIELKWRLVCTEPKKDSYSKEKYHFELTFHKRFKDKVVGSYLPFILTKAKDIKEKEKVVKIYNRDCPYDDEDGGSGQWGGVNLEHPSTFDTLAMDPELKKFIIDDLDRFVRRREFYKRVGKAWKRGYLLYGPPGTGKSSLVAAMANYLKFDIYDLELSSIYSNSDLRRTMLSTTNRSIVVIEDIDCSPLTHDRDEADQCDSPLNTKVSTLTLSGLLNFIDGLWSSFGDERIIVFTTNHKERLDPALLRPGRMDVHINMSYCTVQGLKFLVSNYLGLLENCESQFYEEAVRLIESTTVTPAEVAEELMKSEDAEVALELLVKFLKRKREERAATENEESKGTVQNKDEKKGSEDDNEKNQGGDVENEDLAAKSQELEDKADKYNI* 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00480 943 Coils Coil 924 943 - -
Pte12g00480 943 PANTHER BCS1 AAA-TYPE ATPASE 452 889 - -
Pte12g00480 943 CDD RecA-like_BCS1 661 817 - -
Pte12g00480 943 MobiDBLite consensus disorder prediction 887 943 - -
Pte12g00480 943 CDD RecA-like_BCS1 227 380 - -
Pte12g00480 943 Pfam Domain associated at C-terminal with AAA 475 569 IPR025753 -
Pte12g00480 943 Pfam Domain associated at C-terminal with AAA 41 135 IPR025753 -
Pte12g00480 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 434 IPR027417 -
Pte12g00480 943 Gene3D - 816 888 - -
Pte12g00480 943 Gene3D - 379 454 - -
Pte12g00480 943 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 546 871 IPR027417 -
Pte12g00480 943 SMART AAA_5 248 384 IPR003593 GO:0016887
Pte12g00480 943 SMART AAA_5 682 821 IPR003593 GO:0016887
Pte12g00480 943 ProSitePatterns AAA-protein family signature. 789 807 IPR003960 GO:0005524|GO:0016887
Pte12g00480 943 Pfam ATPase family associated with various cellular activities (AAA) 687 818 IPR003959 GO:0005524|GO:0016887
Pte12g00480 943 Pfam ATPase family associated with various cellular activities (AAA) 253 381 IPR003959 GO:0005524|GO:0016887
Pte12g00480 943 ProSitePatterns AAA-protein family signature. 352 370 IPR003960 GO:0005524|GO:0016887
Pte12g00480 943 Gene3D - 205 378 IPR027417 -
Pte12g00480 943 Gene3D - 639 815 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00480 Pte-Chr12 4277363 4319630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00480 662 833 Miscellaneous Gene Families AT5G53170 28.333 2.11e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00480 - - fve:101308226 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00480 12 4277363 4319630 Pte12g00480 12 4277363 4319630 RCT