Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00418 ATGGGAGACCACGGTGATCCGTTTATGCGCAACCAGAACGCCGCCGTTCAGGCCCGTACCAAAGCGCAGAATCGGGCTAATGTCCAACAGCTCAAGCTGATTGGACAAAGTCACCCTACTGGGTTGACAACTAACTTGTTGAAGCTCTTTGAACCACGGCCACCCCTGGAGTTCAAACCGCCTCCAGAGAAAAGGAAATGTCCGCCATTAACTGGTATGGCACAATTTGTGAAGAATTTTGCGGAGCCTTCTGATCCTGAATACGCTCCTCCTGTCCAGAAGGCTGAAACTCCTGCACAGAGAAGAGCTAGAATCCATAGGCTGAGACTTGAAAAGGGAGCTGAAATGGTAGCTGAAGAGTTGAAGAAATATGACCCAAATAACGATCCAAATGCATCAGGAGATCCCTACAAGACATTGTTTGTGGCCAGGCTTAGTTATGAAGCAACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCTTATGGTCCAATCAAGCGGGTCCGATTGGTTACTGACAAACTGACTAACAAGCCTAGAGGTTATGCCTTCATTGAGTACATGCACACAAGGGACATGAAAGCTGCTTACAAACAAGCTGATGGGAGGAAAATTGATGGAAGAAGGGTGCTTGTGGATGTTGAGCGAGGCAGGACTGTTCCAAATTGGCGACCGAGAAGACTAGGTGGTGGGTTAGGAACTAGTAGGGTTGGAAATGAAGAAGTTAATCAGCAACATCCTGGGAGGGAGCAACAGCTTTCGCGATCTTCTCGATCTGCGGAACCTAGAGCAAGGGATGAGCGGGATCGGGAAAAATCTCGGGAAAGAGGAAGGGACAGAGAACGTGAGAAGTCGCGTGAACGCTCAAGTGATAGAGGGAGGGACCGTGACCACAAAGAGGACAGGCACCATAGAGATCGTGATAGAGCCAGGGACAGAGATAGGGAACGTGAAAGAGATAGTGGGCGAGAAAGGGAAAGAGACCGTGGACGTGATAGAGACCGTACACGTGATCGTGACCGAGAAAGAGATCCTGATCGTGAGAGAGATCATGGCCGTCACCGGGACAGGGATAGGGATTATGATGGTAAGGATACTGACAGACGTTCACGTGACAGGGAGTCTGAATATGATCGCGTTGAATCAAAACATGAGAGGGATCACCACGGTGACAAGGAGCGTGAGTATGAAATTGAGGATGAACAAGGCTGGTATGAGCAACGTGAGCATGGGCATAAGCGTGATGACCTTGACCACTATGATCACTATGAACATCATCGAGGGCGTAGTAGCAAGTATGACCATGTTGATGACCATGGTGACTATGATCGATACAATCAGTATGCTACTGATCAAATGGAAGATGACTATCATAAAGATCGAGCAAAGTCTGAATCACGTGATAGAGAGAAAACTGATCGTGAACATCGACGCTCCAAAAGATCTGCCTCGAAGGATTATGATTACTAG 1467 0.4799 MGDHGDPFMRNQNAAVQARTKAQNRANVQQLKLIGQSHPTGLTTNLLKLFEPRPPLEFKPPPEKRKCPPLTGMAQFVKNFAEPSDPEYAPPVQKAETPAQRRARIHRLRLEKGAEMVAEELKKYDPNNDPNASGDPYKTLFVARLSYEATESRIKREFESYGPIKRVRLVTDKLTNKPRGYAFIEYMHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTSRVGNEEVNQQHPGREQQLSRSSRSAEPRARDERDREKSRERGRDREREKSRERSSDRGRDRDHKEDRHHRDRDRARDRDRERERDSGRERERDRGRDRDRTRDRDRERDPDRERDHGRHRDRDRDYDGKDTDRRSRDRESEYDRVESKHERDHHGDKEREYEIEDEQGWYEQREHGHKRDDLDHYDHYEHHRGRSSKYDHVDDHGDYDRYNQYATDQMEDDYHKDRAKSESRDREKTDREHRRSKRSASKDYDY* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00418 488 CDD RRM_snRNP70 137 227 IPR034143 GO:0030619
Pte12g00418 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 209 IPR000504 GO:0003723
Pte12g00418 488 SMART rrm1_1 139 212 IPR000504 GO:0003723
Pte12g00418 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Pte12g00418 488 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 59 301 - -
Pte12g00418 488 MobiDBLite consensus disorder prediction 82 101 - -
Pte12g00418 488 SUPERFAMILY RNA-binding domain, RBD 126 238 IPR035979 GO:0003676
Pte12g00418 488 MobiDBLite consensus disorder prediction 236 257 - -
Pte12g00418 488 FunFam U1 small nuclear ribonucleoprotein 70 kDa 125 250 - -
Pte12g00418 488 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 41 129 IPR022023 -
Pte12g00418 488 MobiDBLite consensus disorder prediction 1 23 - -
Pte12g00418 488 Gene3D - 125 250 IPR012677 -
Pte12g00418 488 MobiDBLite consensus disorder prediction 220 488 - -
Pte12g00418 488 MobiDBLite consensus disorder prediction 258 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00418 Pte-Chr12 3435776 3440535 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00418 K11093 - cit:102622406 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00418 12 3435776 3440535 Pte12g00418 12 3435776 3440535 RCT