Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00235 ATGGCGCCTGTGTCAGCTCTAGCTAAGTACAAACTGGTATTCTTGGGAGACCAGTCTGTGGGCAAGACCAGCATCATCACTCGCTTTATGTACGACAAATTCGATAACACCTATCAGGCTACAATTGGTATTGATTTTCTGTCAAAAACCATGTACCTTGAAGATCGAACTGTGCGGCTGCAGCTCTGGGATACAGCTGGACAGGAAAGATTCAGAAGTCTTATTCCTAGTTACATAAGGGATTCATCCGTTGCTGTCATTGCATATGACGTCGCAAGCAGGCAGACTTTCCTAAACACAGTGAAGTGGATTGAAGAGGTCCGCACTGAAAGAGGCAGTGATGTCATCATTGTTCTCGTTGGAAACAAAACTGACCTTGTAGAGAAGAGGCAAGTCTCTGTAGAGGAAGGAGAAGCTAAAGCCCGCGAGCTAAATGTCATGTTCATTGAAACCAGTGCAAAAGCTGGCTTTAATATTAAAGCCCTCTTCAGAAAAATAGCTGCAGCATTGCCAGGAATGGAGACTCTTTCTTCAGCAAAGCAAGAAGACATGGTTGATGTGAATCTGAAATCTACAGCTACGACTAATACGCAGTCTCAATCTGAATCTAGTGGATGCTCATGTTGA 627 0.4402 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIAYDVASRQTFLNTVKWIEEVRTERGSDVIIVLVGNKTDLVEKRQVSVEEGEAKARELNVMFIETSAKAGFNIKALFRKIAAALPGMETLSSAKQEDMVDVNLKSTATTNTQSQSESSGCSC* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00235 208 SMART ran_sub_2 15 207 - -
Pte12g00235 208 SMART rab_sub_5 10 173 - -
Pte12g00235 208 Pfam Ras family 11 169 IPR001806 GO:0003924|GO:0005525
Pte12g00235 208 Gene3D - 6 206 IPR027417 -
Pte12g00235 208 SMART rho_sub_3 12 172 IPR001806 GO:0003924|GO:0005525
Pte12g00235 208 CDD Rab6 10 170 - -
Pte12g00235 208 FunFam Probable Ras-related protein Rab-6A 6 202 - -
Pte12g00235 208 ProSiteProfiles small GTPase Ras family profile. 5 208 IPR001806 GO:0003924|GO:0005525
Pte12g00235 208 PRINTS Transforming protein P21 ras signature 113 126 - -
Pte12g00235 208 PRINTS Transforming protein P21 ras signature 10 31 - -
Pte12g00235 208 PRINTS Transforming protein P21 ras signature 33 49 - -
Pte12g00235 208 PRINTS Transforming protein P21 ras signature 51 73 - -
Pte12g00235 208 PRINTS Transforming protein P21 ras signature 148 170 - -
Pte12g00235 208 SMART ras_sub_4 7 173 - -
Pte12g00235 208 ProSiteProfiles small GTPase Rho family profile. 3 179 - -
Pte12g00235 208 ProSiteProfiles small GTPase Rab1 family profile. 5 208 - -
Pte12g00235 208 NCBIfam small GTP-binding protein domain 9 166 IPR005225 GO:0005525
Pte12g00235 208 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 187 IPR027417 -
Pte12g00235 208 PANTHER RAS-RELATED PROTEIN RAB 10 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00235 Pte-Chr12 1896741 1901233 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00235 K07893 - gmx:100794537 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00235 12 1896741 1901233 Pte12g00235 12 1896741 1901233 RCT