Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00232 ATGGATTCGCAACAGAACAATCTTTTCGAGACGGCTTCACAAACTGCTAATGACGCCTATACTTTTCTCGAATTCAATACTCAGGGAGAGGATTTCGACTATCCTGAGTTCCGTGACCCGATTTGTTCTTCTGTGGCTTGGCCCACTCCTTCCGATTCATTATCCGACCCAACAGACCGCGGGGGAGGAGGTGGGACTGGGTCTGATAACCATTCCGATGCTTCACCTGTATCGGCCGCTCCAGGTAGCGCGATGAAAAGTCGAGGGGGTGGGTCTGGCAGTAGTAGTGTGAATAATCACATGGTTGACGCTATAGCAGCTAGCATGAGCGGCTTGAATTTTGAAGACACCGCTGATGATGACAATTACGATTATGGAAAAGGAGATTTCACTGAACATGCTTGCCGCTATTGTGGGGTGTCAAACCCTGCTTGTGTTGTGAGGTGTAATGTTCCGTCGTGTCGCAAATGGTTTTGTAATTCCAGAGGAAACACTTCTGGCTCGCATATCGTGAACCACTTGGTTAGAGCAAAACACAAGGAAGTATGTCTACACAAAGACAGTCCTTTAGGAGAAACGATCCTTGAATGCTACAATTGTGGATGTCGTAACGTGTTTCTCCTCGGATTTATTTCGGCAAAGACAGAGAGTGTGGTGGTTCTACTTTGTCGTGAACCTTGCTTGAATGTCAATGCATTGAAGGATATGAATTGGGACCTCAGTCAGTGGTGTCCTCTCATAGATGATAGGTGCTTCCTGCAATGGCTTGTAAAGATCCCATCTGAACAAGAGCAGTTAAGAGCACGCCAAATTGGTGCACAACAAATAAACAAGATAGAAGAGCTCTGGAAAACCAATCCTGATGCCACTCTTGAAGACCTGGAAAAGCCTGGTGTAGATGATGAGCCACAACCTGTCGCAATAAAATATGAAGATGCTTATCAGTATCAAAATGTCTTCGCACCTCTGATCAAGCTTGAAGCTGACTATGATAAGATGATGAAAGAATCTCAAAGCAAGGATAATGTAACAATTCGATGGGATATTGGTCTTAACAAAAAGCGCATTGCATATTTCGTCTTTCCAAAGGAAGACAATGAGCTGCGCCTTGTACCAGGTGATGAGCTACAGTTGCGTTACTCTGGAGATGCTGCTCACCCGGCATGGCAGTCAGTCGGACATGTGGTTAAGCTAACTGCACAAGAGGAAGTTGCCCTTGAGCTCCGTGCTAGTCAGGGTGTTCCAGTCGATTTGAACCATGGATTTAGTGTTGATTTTGTTTGGAAGAGTACTAGTTTTGATAGGATGCAGGGAGCCATGAAAACATTTGCAGTGGATGAGACGAGTGTGAGCGGCTACATATACCATCACTTGTTGGGCCATCAGGTTGAGGATCAAATGGTTCGGAACACATTGCCTCGTCGGTTTGGTGCTCCTGGCCTTCCAGAGCTCAATGCATCACAAGTTTTTGCTGTTAAGAGTGTTCTTCAAAGGCCGATAAGTTTGATCCAAGGTCCTCCAGGCACTGGTAAAACTGTGACTTCTGCTGCCGTTGTATATCACATGGCAAAACAAGGCCAGGGACAGGTTTTGGTATGTGCCCCAAGTAATGTGGCTGTAGATCAACTAGCAGAAAAGATAAGTGCTACAGGACTGAAAGTGGTTAGGCTTTGTGCAAAATCTAGGGAGGCTGTCAGTTCTCCTGTTGAGCATTTAACTCTTCATTACCAGGTTCGACATCTTGATACATCTGACAAGAGTGAACTCCACAAGTTACAACAACTCAAGGATGAGCAAGGAGAACTTTCCAGTAGTGATGAGAAAAAGTATAAAGCACTGAAGCGAGCTACAGAGCATGAGATTTCTCAGAGTGCAGATGTGATTTGCTGTACCTGTGTTGGTGCTGGAGATCCTCGACTTGCTAATTTTAGGTTTCGTCAGGTACTTATCGATGAGTCTACACAGGCAACAGAACCTGAATGCCTTATTCCCTTAGTTCTAGGAGCCAAGCAGGTCATCCTTGTTGGTGATCACTGCCAGCTTGGTCCAGTCATTATGTGCAAAAAAGCTGCTAAGGCAGGGCTTGCGCAATCTTTGTTCGAACGTCTTGTTCTGCTTGGTGTTAAACCAATTCGTTTGCAGGTCCAATATCGGATGCACCCTTCTCTTTCTGAGTTTCCGTCTAACAGCTTTTATGAAGGAACGCTTCAAAATGGAGTCACTGTGAATGAAAGGCTGTCGGCAGGCATTGAATTTCCTTGGCCTGTACCGAATCGTCCTATGTTCTTCTATGTCCAGATGGGACAAGAAGAGATAAGTGCCAGTGGAACATCTTACTTAAACAGGACTGAGGCCGCCAATGTTGAAAAAATTGTAACCACTTTTTTGAGGAGTGGAGTTGTTCCCAGTCAGATTGGGGTTATAACACCTTATGAGGGACAAAGAGCTTACATCGTGAACTACATGTCAAGGAATGGTGCTCTCAGGCAGCAACTCTACAAGGAAATTGAGGTTGCAAGTGTGGATTCATTTCAAGGACGAGAGAAAGATTACATCATCCTGTCTTGTGTAAGAAGTAACGAACATCAGGGAATTGGATTTCTGAATGATCCTAGGAGGCTCAATGTTGCCCTGACACGTGCAAGATATGGTATTGTCATCTTGGGAAACCCAAAGGTTCTCAGCAAGCAGCCTCTATGGAATGGCTTATTGGCTCACTACAAGGAGCACGAATGTTTGGTTGAAGGGCCGCTGAATAATTTGAAGCAAAGCATGGTGCAATTTCAGAAGCCCAAAAAAATTTACAATGACCGAAGACTTCTCTACGGTGGTGGGCCTGGTGTCCTGTCTAATGACAATTTTGGGTCTGGCACCTCCTCTGGCCCAGCTTCTGATAAAAGAAGTAGCCGTGGGAGAGGATCTTATATTTCTCCAGGTCCACCAAATGGGACCCATAAGCCTGGTCTACACCCAACTGGATATCCAATGGCCCGGGTTCCCATCCCACCTTTCCATGGTGGACACCCATCTCAGCCATATGCTATTCCAAGAAGTGGTGGTGTTCATGGGCCAGTTGGGGCAGTTCCTCATGTGCCAACTCCAGGAAGTCGAGGCTTCGGTGCTGGCAGAGGCAATTCAGGTGCCCCTATTGGTGGTCATATTCCTCACCAGCTAGATAGCCAACCATCCATTGGAAGCCTCGGATCTAACTTCAATTTCCCTGCTCTTGAGAATCCAAATAGCCAACAGTCAGTTGGAGGCCCATTGTCACAACCTGGATTTGTTTCTAGTCAGATGCAAGGCCAAGGACCAAACCAGACATATCGAGATCAATTCTCAATGGCAGGGATGTCACAGGATTTCTTGGGTGATGATTTCAAAAGCCAGGGGTCTCATGTCCCTTATAATGTTGATTTCTCTACCCAGGCTTCTCGAAGTGGGTATGCTGTTGATTATGCCACTCAAGCACCCCAAGTTGGATTTCCGGGAAACTTCATGAACCAGAACTCTCAAGCTGGATTTTCTCGCTTTGGCTCTGGCAATGATTTTATGTCTCAGGACTACATGCCTCATGGATCACAAAGTTTCTTTACACAGGCGGGTGACCCTTCGCAAGATGATATGCCACAGGGTCCTTTTGGTGTGGCTAATGCCAGTTCTCTCCAGTCTCAGGGTGTAATGAACTCCCTTTACTCTCAGCCCTTCTCTCATTACAACACACAACCACTCAACCTTCAGGGTTCCCAATCACAGCCTCAGGGTCAGTGCTCTCAAAACCAGAAAATCCACTATAATGGTTGA 3801 0.4604 MDSQQNNLFETASQTANDAYTFLEFNTQGEDFDYPEFRDPICSSVAWPTPSDSLSDPTDRGGGGGTGSDNHSDASPVSAAPGSAMKSRGGGSGSSSVNNHMVDAIAASMSGLNFEDTADDDNYDYGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQIGAQQINKIEELWKTNPDATLEDLEKPGVDDEPQPVAIKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIAYFVFPKEDNELRLVPGDELQLRYSGDAAHPAWQSVGHVVKLTAQEEVALELRASQGVPVDLNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHQVEDQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAVVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEHEISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVILVGDHCQLGPVIMCKKAAKAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTVNERLSAGIEFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLAHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLLYGGGPGVLSNDNFGSGTSSGPASDKRSSRGRGSYISPGPPNGTHKPGLHPTGYPMARVPIPPFHGGHPSQPYAIPRSGGVHGPVGAVPHVPTPGSRGFGAGRGNSGAPIGGHIPHQLDSQPSIGSLGSNFNFPALENPNSQQSVGGPLSQPGFVSSQMQGQGPNQTYRDQFSMAGMSQDFLGDDFKSQGSHVPYNVDFSTQASRSGYAVDYATQAPQVGFPGNFMNQNSQAGFSRFGSGNDFMSQDYMPHGSQSFFTQAGDPSQDDMPQGPFGVANASSLQSQGVMNSLYSQPFSHYNTQPLNLQGSQSQPQGQCSQNQKIHYNG* 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00232 1266 Pfam RNA helicase UPF1, 1B domain 338 427 IPR040812 -
Pte12g00232 1266 MobiDBLite consensus disorder prediction 1059 1109 - -
Pte12g00232 1266 MobiDBLite consensus disorder prediction 951 1109 - -
Pte12g00232 1266 FunFam Regulator of nonsense transcripts 1 718 929 - -
Pte12g00232 1266 MobiDBLite consensus disorder prediction 951 971 - -
Pte12g00232 1266 Gene3D - 569 623 - -
Pte12g00232 1266 CDD SF1_C_Upf1 719 908 IPR047187 -
Pte12g00232 1266 Gene3D - 339 427 - -
Pte12g00232 1266 Gene3D - 718 929 IPR027417 -
Pte12g00232 1266 Pfam AAA domain 585 686 IPR041677 GO:0004386
Pte12g00232 1266 ProSiteProfiles Upf1 cysteine-histidine-rich (CH-rich) domain profile. 127 286 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Pte12g00232 1266 MobiDBLite consensus disorder prediction 1188 1213 - -
Pte12g00232 1266 CDD DEXXQc_UPF1 483 718 - -
Pte12g00232 1266 CDD 1B_UPF1-like 339 426 IPR040812 -
Pte12g00232 1266 Pfam AAA domain 696 891 IPR041679 -
Pte12g00232 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 913 IPR027417 -
Pte12g00232 1266 Pfam Type III restriction enzyme, res subunit 489 556 IPR006935 GO:0003677|GO:0005524|GO:0016787
Pte12g00232 1266 Gene3D - 447 717 IPR027417 -
Pte12g00232 1266 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 492 624 IPR014001 -
Pte12g00232 1266 MobiDBLite consensus disorder prediction 1188 1205 - -
Pte12g00232 1266 MobiDBLite consensus disorder prediction 1238 1266 - -
Pte12g00232 1266 CDD ZBD_UPF1-like 134 256 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Pte12g00232 1266 PANTHER DNA2/NAM7 HELICASE FAMILY 238 983 IPR045055 -
Pte12g00232 1266 FunFam regulator of nonsense transcripts 1 homolog 339 427 - -
Pte12g00232 1266 MobiDBLite consensus disorder prediction 33 97 - -
Pte12g00232 1266 Pfam RNA helicase (UPF2 interacting domain) 133 286 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00232 Pte-Chr12 1880957 1890536 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00232 K14326 - qsa:O6P43_024444 2323.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00232 12 1880957 1890536 Pte12g00232 12 1880957 1890536 RCT