Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00228 ATGGCTGTTCAAGCTCAATACCCTTCAAATGTCTTCCTTTTAAACAGAAACGGACAAGAAGGGCATGAGTTTTCATTACCACCACAACCAGGAGGATTTCTCGATCAATCCCAGATGTTGTACAGCAAAGGAGCCAGTGTTAATTCACGCAAGAGAGGAAGAGAGGTTATAACTGCAGCAAGTGGGGTCATCCAAACAGTTCCTAACAACGTTAATGTTATCAATCCATTCTCTAATCTGCAACCACAAACTCCTCAGCTAATAGAACTCTCTCAACTCCACAATCAGCAACACAATGTGGTATCCACCGGCCTGTGTTTGTCTTTCGGCGACCAACAACAACAACATCGACTGCAATTGCAGCAGCAGCAACAACAAAGTATCTCTCATTCCTCTGCGTTCTTGTCGGAAGGATTTTCCTCACAAATTAAACAACAGAGGGATGAAATCGATCAATTCCTTCAGGCCCAGGCCGAGCAATTGAGGCGGATTTTGGCTGAGAAGAGACAGAGCCACTATCGTGCCCTCATAACTGCAGCGGAAGAATCACTGGCCCGACGATTAAGAGAGAAGGAATCGGAGGTGGAGAAGGCCTCAAGAAGAAACGCAGAGCTAGAAGCACGCGTTGCCCAACTTAGCGTGGAGGCGCAAGTATGGCAAGCGAAGGCGAGATCACAGGAAGCCACGGCAGCCTCGCTCCAAGCACAACTACAGCATGCTATGATGATCGGAGGTGGGATGATGGGTGCGCAGGATAAATGGGATGACGGAGTTGGCACCGGTGGGGTATCGTGCGCCGTTGGTGGTGGAGAAGGTCAAGCTGATGATGCGGAATCAGCTTATGTCGACCCTGAACGGGTCACAGTACCGGGTCCAAAATGTAGAGGGTGCGAGAAACGAGTCGCTTCAGTGGTTGTGCTGCCGTGTCGGCACCTATGTATATGTACAGAGTGCGACAAGCATTTTGGGGCGTGTCCGGTTTGCCTTGCCGTCAAGAATTCAACCGTGGAAGTATATCTTTCTTAA 1026 0.4932 MAVQAQYPSNVFLLNRNGQEGHEFSLPPQPGGFLDQSQMLYSKGASVNSRKRGREVITAASGVIQTVPNNVNVINPFSNLQPQTPQLIELSQLHNQQHNVVSTGLCLSFGDQQQQHRLQLQQQQQQSISHSSAFLSEGFSSQIKQQRDEIDQFLQAQAEQLRRILAEKRQSHYRALITAAEESLARRLREKESEVEKASRRNAELEARVAQLSVEAQVWQAKARSQEATAASLQAQLQHAMMIGGGMMGAQDKWDDGVGTGGVSCAVGGGEGQADDAESAYVDPERVTVPGPKCRGCEKRVASVVVLPCRHLCICTECDKHFGACPVCLAVKNSTVEVYLS* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00228 341 ProSiteProfiles Zinc finger RING-type profile. 294 328 IPR001841 -
Pte12g00228 341 Pfam Zinc finger, C3HC4 type (RING finger) 293 329 - -
Pte12g00228 341 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 276 340 - -
Pte12g00228 341 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 43 338 IPR017066 -
Pte12g00228 341 CDD mRING-HC-C3HC5_CGRF1-like 292 328 - -
Pte12g00228 341 PIRSF SBP1_RNase_bind 1 341 IPR017066 -
Pte12g00228 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 341 IPR013083 -
Pte12g00228 341 Coils Coil 181 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00228 Pte-Chr12 1818214 1820140 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00228 K19042 - qsa:O6P43_024439 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00228 12 1818214 1820140 Pte12g00228 12 1818214 1820140 RCT