Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00226 ATGGCTTTGACTCTTCGTTCTTCAACTTCTTTGGTAAATCAAATGGACACCAAAGGACTCAAGAATCTCGACCACGACCATGTGGCCACTCCAGCCATAGTTCCCATGCCGAATACCAAGCCGCCATCATTTCGTGTCAGAGCAAGTATGTCGACGCAAGAACAAACATCTTCTCGTAAGAAAATCATTCCCTTTGAGGGAATCAATCGAAATGATGAATTGGAAAAGCTCCATGCACCAGTACGTGTTCACGAAACCAATGGCTCCAAAGTCCCCGTATTTGTGATGATGCCGTTGGATACGATAACACCAGAAGGTCATTTGAATAAGCCGAGAGCTATCAACGCGAGTTTGATGGCCTTGAAGAGTGCTGGAGTGGAAGGGGTCATGATGGATGTTTGGTGGGGTTTGGTTGAGAGAGATGGACCTATGAAGTATAACTGGGAAGCTTATGCTGAGGTTGTGGAAATGGTGAAAAACCATGGCCTGAAACTCCAAGCTGTCATGTCTTTTCATCAGTGTGGGGGAAATGTTGGAGACTCATGCTTCATTCCGTTGCCTCCTTGGGTTCTGGAAGAAATCAGCAAGGACCCTGATCTTGTATACACAGACAGATCAGGAAGGAGAAACCCTGAGTACTTGTCTTTAGGGTGTGATTCAATGCCTATCCTAAAAGGTAGGACACCTATCCAGGCCTACAGCGATTATATGAGGAGTTTCCGTGACAGATTCAGAGAAGATTTGGACAATACCATTGTGGAAATTCAGGTGGGAATGGGTCCTTGTGGAGAGCTAAGATATCCAGCTTATCCGGAGAGCAATGGAACTTGGAGGTTCCCAGGAATCGGAGAATTCCAGTGCTACGACAAGTACATGAAATCATCTCTGCAAGCAGCAGCAGAAGCAATTGGAAAGAAAGAATGGGGAAACAGAGGACCAGATGATGCTGGACAATACAACCAACTCCCCGAGGACAGTGGGTTTTTCAGAAGGGAAGGAACATGGACCACTGAATATGGAGACTTCTTTCTCAATTGGTACTCTTCTAAGCTAATAGAGCATGGTGAAAGGATCCTTTCATCAGCGAAAGGAGTATTCCAAGAAACTGGGGTAACGCTCTCAGGAAAAGTAGCAGGAATCCACTGGCACTACAGAACAAGATCCCACGCACCTGAATTGACTGCTGGATACTACAACACAAGACGTCATGATGGTTATCAACCGATAGCACAGATGATGGCAAAACATGGGGTCGTGTTAAATTTCACCTGTATGGAAATGAAAGATTATGAGCAGCCTGAACACGCAAACTGCTCACCTGAAGGGTTAGTTCAGCAAGTGAAGAAGGCAGTCAGTGCTGCCGGAGGAGAACTAGCAGGGGAGAATGCTCTTCCAAGGTATGACACAAGTGCATTTGGACAGGTTTTGGCCACAAGCCAGTCAGATTCTGGATATGGGTTGAGTGCTTTTACATATCTAAGAATGAGCAAGCACTTGTTTGAAGGAGATAACTGGAGGAACCTTGTAGATTTTGTGAGAAGCATGTCTGAAGGTGGTCGAAGAGCCAGACTTTCAGAAGAGGACTGCAGAGGAACAGATCTATATGTTGGACATATCAAGAGAAACAAGAAAGAAAGTCAAGAGTTTGCTATGGTTTAA 1659 0.4527 MALTLRSSTSLVNQMDTKGLKNLDHDHVATPAIVPMPNTKPPSFRVRASMSTQEQTSSRKKIIPFEGINRNDELEKLHAPVRVHETNGSKVPVFVMMPLDTITPEGHLNKPRAINASLMALKSAGVEGVMMDVWWGLVERDGPMKYNWEAYAEVVEMVKNHGLKLQAVMSFHQCGGNVGDSCFIPLPPWVLEEISKDPDLVYTDRSGRRNPEYLSLGCDSMPILKGRTPIQAYSDYMRSFRDRFREDLDNTIVEIQVGMGPCGELRYPAYPESNGTWRFPGIGEFQCYDKYMKSSLQAAAEAIGKKEWGNRGPDDAGQYNQLPEDSGFFRREGTWTTEYGDFFLNWYSSKLIEHGERILSSAKGVFQETGVTLSGKVAGIHWHYRTRSHAPELTAGYYNTRRHDGYQPIAQMMAKHGVVLNFTCMEMKDYEQPEHANCSPEGLVQQVKKAVSAAGGELAGENALPRYDTSAFGQVLATSQSDSGYGLSAFTYLRMSKHLFEGDNWRNLVDFVRSMSEGGRRARLSEEDCRGTDLYVGHIKRNKKESQEFAMV* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00226 552 SUPERFAMILY (Trans)glycosidases 90 518 IPR017853 -
Pte12g00226 552 ProSitePatterns Beta-amylase active site 1. 172 180 IPR018238 GO:0000272|GO:0016161
Pte12g00226 552 Pfam Glycosyl hydrolase family 14 94 511 IPR001554 GO:0000272|GO:0016161
Pte12g00226 552 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 371 387 IPR001554 GO:0000272|GO:0016161
Pte12g00226 552 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 335 354 IPR001554 GO:0000272|GO:0016161
Pte12g00226 552 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 125 139 IPR001554 GO:0000272|GO:0016161
Pte12g00226 552 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 406 429 IPR001554 GO:0000272|GO:0016161
Pte12g00226 552 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 260 282 IPR001554 GO:0000272|GO:0016161
Pte12g00226 552 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 146 164 IPR001554 GO:0000272|GO:0016161
Pte12g00226 552 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 388 399 IPR001554 GO:0000272|GO:0016161
Pte12g00226 552 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 168 189 IPR001554 GO:0000272|GO:0016161
Pte12g00226 552 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 443 465 IPR001554 GO:0000272|GO:0016161
Pte12g00226 552 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 57 524 IPR001554 GO:0000272|GO:0016161
Pte12g00226 552 Gene3D Glycosidases 83 550 - -
Pte12g00226 552 PRINTS Plant beta-amylase signature 491 505 IPR001371 GO:0000272|GO:0016161
Pte12g00226 552 PRINTS Plant beta-amylase signature 409 419 IPR001371 GO:0000272|GO:0016161
Pte12g00226 552 PRINTS Plant beta-amylase signature 250 259 IPR001371 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00226 Pte-Chr12 1802675 1805212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00226 1 553 Glycoside Hydrolase AT4G17090 68.051 0.0 799
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00226 K01177 - gmx:100818063 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00226 12 1802675 1805212 Pte12g00226 12 1802675 1805212 RCT