Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00224 ATGGATCAATTATCAGCTATAAGCGAAGAACTAGCTGAGATCGAAGGACAGATCCATGATATCTTTCGCGCTTTATCAAATGGGTTCCAAAAGCTGGACAAGATTAAGGATTCAAATAGGCAGAGTAGGCAGTTGGAAGAGCTCGTTGAAAAATTGCGAGAGTGTAAAAGGCTTATTAAAGAGTTTGATAAAGGAGTTAAGGCTTTGGAGGGCGGAGATGTGGCAACCAACAAAATGCTGAATGAGAAGAAACAATCAATGATCAAAGAATTGAATTCATATGTTGCTCTGAAGAAGCAATATGCTACAAATCTTGAAAACAAGAAGATCGACTTGTTTGAGGGCCCAAACGAAGGATATGCAGAAGATAATGTCTTGCTAGCTTCATCAATGACAAATCAACAGCTTATAGATAATGGCAACCAAATGATGGATGAGACAGATCAAGCCATTGAGAGAACAAAGAAGGTAGTTCATGAAACGATAAATGTTGGAACAGAGACTACAGCGGCTCTCAAGTCTCAGACTGAGCAAATGAGTAGGATTGTTAATGAGCTGGATTCTATTCATTTTTCTTTAAAGAAAGCTTCTAAACTAGTCAAGGAAATTGGTAGGCAGGTTGCAACTGACAAGTGTATTATGGCATTTCTCGTCCTCATTGTAATGGGAGTAATTGCTATTATTATTGTGAAGATTGTTCATCCAAACAACAAGGACATCCTTGATATTCCAGGGCTCGCTCCTCCTGCCATGTCGCGGAAGTTGCTATGGAGTTCTAGTTGA 783 0.3934 MDQLSAISEELAEIEGQIHDIFRALSNGFQKLDKIKDSNRQSRQLEELVEKLRECKRLIKEFDKGVKALEGGDVATNKMLNEKKQSMIKELNSYVALKKQYATNLENKKIDLFEGPNEGYAEDNVLLASSMTNQQLIDNGNQMMDETDQAIERTKKVVHETINVGTETTAALKSQTEQMSRIVNELDSIHFSLKKASKLVKEIGRQVATDKCIMAFLVLIVMGVIAIIIVKIVHPNNKDILDIPGLAPPAMSRKLLWSSS* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00224 260 Coils Coil 35 65 - -
Pte12g00224 260 CDD SNARE_SNAP25N_23N_29N_SEC9N 138 202 IPR044766 GO:0005484|GO:0031201
Pte12g00224 260 FunFam novel plant SNARE 11 132 211 - -
Pte12g00224 260 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 9 230 - -
Pte12g00224 260 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 141 203 IPR000727 -
Pte12g00224 260 Gene3D - 132 211 - -
Pte12g00224 260 SMART tSNARE_6 136 203 IPR000727 -
Pte12g00224 260 SUPERFAMILY SNARE fusion complex 131 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00224 Pte-Chr12 1788524 1793182 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00224 K08494 - qsa:O6P43_024432 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00224 12 1788524 1793182 Pte12g00224 12 1788524 1793182 RCT