Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00174 ATGTCAAAGAGTTACTTCAAACAAGAACATGAGTTTGAGAAGAGAAGAGCTGAGGCAGCTAGGATTAGGGAGAAATACCCGGATAGGATCCCGGTAATTGTGGAGAAGGCAGAACGAAGTGACATCCCGAGCATTGACAAAAAGAAGTATCTTGTCCCTGCTGATCTGACAGTTGGGCAGTTTGTGTATGTCATCCGCAAAAGGATAAAGCTAAGCGCTGAAAAGGCTATATTCATATTTGTAGACAATGTGCTCCCACCTACAGGTGCAATTATGTCCGCTGTATATGATGAGAAGAAGGATGGAGACGGGTTTCTCTATGTTACCTACAGTGGGGAGAACACGTTTGGGAAGTAA 357 0.4398 MSKSYFKQEHEFEKRRAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAVYDEKKDGDGFLYVTYSGENTFGK* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00174 118 FunFam Autophagy-related protein 1 117 - -
Pte12g00174 118 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
Pte12g00174 118 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Pte12g00174 118 CDD Ubl_ATG8 12 114 - -
Pte12g00174 118 Gene3D - 1 117 - -
Pte12g00174 118 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 3 117 IPR004241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00174 Pte-Chr12 1470485 1473120 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00174 K08341 - gmx:100818620 211.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00174 12 1470485 1473120 Pte12g00174 12 1470485 1473120 RCT