Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00110 ATGGACGATCCATCAGTTGATTTGCTGAGTACTCAATCAGCTCCAAGAACTCCTTCTCTCCATGCCTCGTCTGCTTCTTCTAACCTTAATCTACCTGCTACCGTTTCTCGGTCATCTGCATCCGTCGAAACAATGACCCCACCAAGCCATATCGATCGAATGCTGAACTCGAATTACCATCCTTCACCCTCAAAAACCATATACTCTGATAGGTTCATACCTAGCAGATCCGGTTCAAATTTTGCACTTTTCGATTTAGTACAACCAATAAATTCTTCAGCTGAGGGTCGTGAGGATAGTTCCAGTACTTACACCTCCCTTTTGCGAACTGCGTTGTTTGGACCCGAAGTCGGAGGCATTGCTCCGGTGACACCCGACAAGCGCAGCTTGACCATAAATCCACCCAGTAGGAACATTTTCCGGTTCAAGACCGAGACTAGGAAGTCCATGGAGTCGCTTTCTCCTTTTATGTCTGAAGATGTTGAACCTGGGGTTAGTCCTAGTCCTGTTAAGGCTCCGAGAAAGGTTCCTAGATCACCATATAAGGTTCTGGATGCACCGGCTCTGCAAGATGATTTTTATTTAAATCTCGTGGATTGGTCTGCACATAATGTGCTAGCTGTGGGACTGGGCAACTGTGTTTATTTGTGGAATGCTTGCAGCAGCAAGGTGACTAAGTTATGTGACTTGGGCATTGATGTTAGTGTTTGTTCGGTGGGCTGGACTCAACGTGGTTCCCATCTTGCTGTTGGAACAAGTAATGGCAAAGTTCAGATCTGGGATGCATCCCGTTGTAAGAACTTAAGAACCATGGAAGGTCATCGGTTACGTGTCGGGGCATTGGCCTGGAGTTCATCATTATTATCTACCGGTGGCCGAGATAAAAGTATTTATCAACGTGACATACGTGCTTCGGACGATTTTGTCAGCAAACTCTCTGGTCACAAATCAGAGGTTTGTGGACTGAAGTGGTCGTATGATAACCGTGAGTTAGCATCAGGTGGAAATGATAATAGACTTTTTGTGTGGAATCAGCATTCTAACCAACCTGTGCTGAAATACTGTGAGCATACGGCAGCTGTCAAAGCTATAGCATGGTCTCCCCATGTTCATGGACTTCTTGCATCTGGGGGTGGGACTGCTGACCGATGTATTAGATTCTGGAACACAACCACAAACTCCCATTTGAGCTGTATGGACACTGGAAGTCAGGTATGCAATCTTGTCTGGTCTAAAAATGTAAACGAACTGGTGAGTACCCATGGATACTCCCAAAATCAGATCATAGTTTGGAGATATCCTTCCATGTCAAAGCTGGCAACCCTTACAGGCCATACATATAGAGTCCTTTATCTTTCCATCTCCCCCGATGGGCAGACAATTGTTACTGGTGCTGGAGATGAAACCCTAAGGTTCTGGAATGTATTCCCTTCCCCTAAATCTCAGGTAAATTGTTCTTTATAA 1464 0.4529 MDDPSVDLLSTQSAPRTPSLHASSASSNLNLPATVSRSSASVETMTPPSHIDRMLNSNYHPSPSKTIYSDRFIPSRSGSNFALFDLVQPINSSAEGREDSSSTYTSLLRTALFGPEVGGIAPVTPDKRSLTINPPSRNIFRFKTETRKSMESLSPFMSEDVEPGVSPSPVKAPRKVPRSPYKVLDAPALQDDFYLNLVDWSAHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDVSVCSVGWTQRGSHLAVGTSNGKVQIWDASRCKNLRTMEGHRLRVGALAWSSSLLSTGGRDKSIYQRDIRASDDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSNQPVLKYCEHTAAVKAIAWSPHVHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPSMSKLATLTGHTYRVLYLSISPDGQTIVTGAGDETLRFWNVFPSPKSQVNCSL* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00110 487 MobiDBLite consensus disorder prediction 155 177 - -
Pte12g00110 487 FunFam FIZZY-related 2 isoform 1 177 477 - -
Pte12g00110 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 442 475 IPR001680 GO:0005515
Pte12g00110 487 Gene3D - 170 479 IPR015943 GO:0005515
Pte12g00110 487 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 344 - -
Pte12g00110 487 SMART WD40_4 177 218 IPR001680 GO:0005515
Pte12g00110 487 SMART WD40_4 347 389 IPR001680 GO:0005515
Pte12g00110 487 SMART WD40_4 221 261 IPR001680 GO:0005515
Pte12g00110 487 SMART WD40_4 435 474 IPR001680 GO:0005515
Pte12g00110 487 SMART WD40_4 305 344 IPR001680 GO:0005515
Pte12g00110 487 SMART WD40_4 264 301 IPR001680 GO:0005515
Pte12g00110 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 353 IPR001680 GO:0005515
Pte12g00110 487 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 442 475 - -
Pte12g00110 487 ProSitePatterns Trp-Asp (WD) repeats signature. 461 475 IPR019775 -
Pte12g00110 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 236 270 IPR001680 GO:0005515
Pte12g00110 487 MobiDBLite consensus disorder prediction 1 58 - -
Pte12g00110 487 Pfam WD domain, G-beta repeat 438 474 IPR001680 GO:0005515
Pte12g00110 487 Pfam WD domain, G-beta repeat 349 389 IPR001680 GO:0005515
Pte12g00110 487 Pfam WD domain, G-beta repeat 309 344 IPR001680 GO:0005515
Pte12g00110 487 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 40 480 IPR033010 GO:0010997|GO:0097027|GO:1904668
Pte12g00110 487 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 180 478 IPR011047 -
Pte12g00110 487 Pfam Anaphase-promoting complex subunit 4 WD40 domain 231 285 IPR024977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00110 Pte-Chr12 917494 922818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00110 248 477 Miscellaneous Gene Families AT5G08390 20.172 2.27e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00110 K03364 - qsa:O6P43_024251 853.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00110 12 917494 922818 Pte12g00110 12 917494 922818 RCT