Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00065 ATGTGGATTTTTGGGTGGAAAGGTCCATCTGGGTTTTCAGCTTCTACTACTGCAGAACAAGTTACTCAAGGAATCGACGCAGCTGGTCTCACTGCCATTGTTACAGGAGCATCTAGTGGTCTCGGTGTGGAGACTGCCCGGGTTCTTGCCTTGCGCGGTGTACATGTTGTCATGGCAGTGAGGAATGTGGATGCTGGTACGAAAGTAAGAGAGACAATAAGTAAAGAAATTCCAACTGCAAAAATTGATGTGATGGAGTTAGATCTTAGTTCTATGGCTTCAATAAGGAAATTTGCTTCAGACTTCATCTCTTCTGGTCTTGATCTCAATATCCTCATCAATAATGCCGGTGTGATGGCAACTCCGTTCATGCTTTCCAAAGACAACATTGAATTGCAGTTTGCGACAAACTATTTAGGTCATTTTCTTTTGACAAACCTATTGCTTGAGATCATGAAAGCGTCAGCTCGCAAGTCCAACAAGGAGGGAAGGATTGTTATTTTATCTTCAGAGGCGCATCGATACACATACCGTGAAGGCATCCGCTTCGATAAGATCAACGATGAATCAGAATACAGAAGTATATATACTTATGGACAATCGAAGCTTGCCAACACATTACATGCAAATGAGCTTGCAAGGCGCTTAAAGGAAGAGGGAGTGGAGATAACTGCTAACTCACTTCATCCTGGAGCAATTATTACAAATCTTTTCCAACACTTTGGTTTTATTAACGTCATTGCTACTGCAGTGGGGAAGTATTTTCTTAAGAATGTTCAACAGGGAGCTGCTACTTCATGTTTCGTGGCATTACACCCACAGGTTAAGGGTGTTAGCGGCCAATACTTCATGGACAGCAATAAGGCAAAACCCAGCTCCTTGGCTACAGATGCAGAACTTGGAAAAAGGCTATGGGAGTTCAGCTCGAGCTTAATCGATCAAAAGTAA 948 0.4272 MWIFGWKGPSGFSASTTAEQVTQGIDAAGLTAIVTGASSGLGVETARVLALRGVHVVMAVRNVDAGTKVRETISKEIPTAKIDVMELDLSSMASIRKFASDFISSGLDLNILINNAGVMATPFMLSKDNIELQFATNYLGHFLLTNLLLEIMKASARKSNKEGRIVILSSEAHRYTYREGIRFDKINDESEYRSIYTYGQSKLANTLHANELARRLKEEGVEITANSLHPGAIITNLFQHFGFINVIATAVGKYFLKNVQQGAATSCFVALHPQVKGVSGQYFMDSNKAKPSSLATDAELGKRLWEFSSSLIDQK* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00065 315 Gene3D - 20 315 - -
Pte12g00065 315 Pfam short chain dehydrogenase 31 177 IPR002347 -
Pte12g00065 315 PANTHER RETINOL DEHYDROGENASE 9 312 - -
Pte12g00065 315 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 287 IPR036291 -
Pte12g00065 315 CDD retinol-DH_like_SDR_c_like 29 305 - -
Pte12g00065 315 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Pte12g00065 315 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Pte12g00065 315 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Pte12g00065 315 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Pte12g00065 315 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00065 Pte-Chr12 602507 605378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00065 33 291 Acyl Lipid Metabolism Gene Families AT1G63380 26.909 3.08e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00065 - K19329 qsu:112004958 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00065 12 602507 605378 Pte12g00065 12 602507 605378 RCT