Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00060 ATGTCTTCACCTAGCAAACGCCGGGAGATGGATTTGATGAAGCTGATGATGAGCGATTACAAGGTGGAGATGATCAACGATGGAATGCAAGAATTCTATGTGCATTTCAATGGGCCTAAAGAGAGTCCTTATCAAGGAGGTGTATGGAGGATAAGGGTGGAACTACCCGATGCATATCCTTATAAATCTCCATCAATTGGTTTTGTTAACAAAATTTATCACCCTAACGTTGATGAAATGTCTGGCTCAGTGTGCCTAGACGTGATTAACCAGACCTGGAGTCCAATGTTCGACCTTGTTAATGTGTTTGAGGTGTTTCTTCCGCAACTTCTTCTTTATCCAAACCCATCAGACCCATTAAATGGTGAGGCTGCTGCTCTAATGATGCGTGATCGTATTGGTTATGAACAAAAGGTCAAAGAATATTGTGAAAAGTATGCCAAGCCAGAAAATGTAGGAGCTCAACTGGAGGAGATGTCTAGTGATGAGGAGCTGAGCGAAGATGAATATGTCTCTAGTGATGAGGCAGTTGCTGGCGAGCCTGATCCTTAA 552 0.4293 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFNGPKESPYQGGVWRIRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRIGYEQKVKEYCEKYAKPENVGAQLEEMSSDEELSEDEYVSSDEAVAGEPDP* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00060 183 SMART ubc_7 4 148 - -
Pte12g00060 183 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
Pte12g00060 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 135 - -
Pte12g00060 183 FunFam Ubiquitin-conjugating enzyme 5, E2 1 159 - -
Pte12g00060 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Pte12g00060 183 SUPERFAMILY UBC-like 4 148 IPR016135 -
Pte12g00060 183 CDD UBCc 7 143 IPR000608 -
Pte12g00060 183 MobiDBLite consensus disorder prediction 153 183 - -
Pte12g00060 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Pte12g00060 183 MobiDBLite consensus disorder prediction 160 183 - -
Pte12g00060 183 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00060 Pte-Chr12 569646 572078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00060 26 180 Miscellaneous Gene Families AT1G17280 24.419 4.39e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00060 K10576 - qsa:O6P43_034259 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00060 12 569646 572078 Pte12g00060 12 569646 572078 RCT