Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00020 ATGGAGAAGGTTTTCAATCCCATCCACTTCCTCCGTGTGCTTCTGCTTCTGTGTCTACCTATAAGTCTAGCTGGCCATGATTATCGGCAAGCACTGAGCAAGAGCATTCTCTTCTTTGAAGCTCAAAGATCTGGTTACCTTCCCAAAAACCAGAGAGTCACTTGGAGAGCTAATTCTGGTATTCTTGACGGTAAAGCCAGTGGGGTAAATCTGGTTGGAGGGTACTATGATGCCGGCGATAATGTAAAATTTGGGTTACCCATGGCCTTCACAGTTACGATGATGTCCTGGAGCATCATAGAGTATGGGAAGCAAATGGCTACAAATGGTGAGCTTGGGCACGCTATGGAAGCTGTCAAGTGGGGGACAGACTACTTCATAAAAGCCCATCCCCAGCCCTATGTTCTCTACGGAGAGGTGGGAGATGGAAACAATGACCATTACTGCTGGCAAAGACCAGAGGATATGACCACAGACCGCCGGGCTTATAAGATTGATCCCAGCAATCCGGGTTCGGATCTGGCAGGAGAAACAGCCGCTGCCATGGCCGCTGCATCCATTGTTTTCCGGCGCTCGAATCCTGCGTACGCAAGTGAGCTCCTACGCCACGCTTACCAGCTTTTCGAGTTTGCTGATAAATACCGAGGCAAGTACGACAGCAGCATCAGTGTTGCCCGTAAATATTATCAATCCATCAGTGGCTACAATGATGAATTGTTGTGGGCTGCTGCTTGGATGTATCAAGCAACCAATAATCACTATTATTTGGATTACCTGGGAAAGAATGGCGACTCTATGGGTGGAACTGGATGGAGAATGACTGAATTTGGATGGGATGTCAAATATGCTGGTGTGCAGACACTGGTAGCCAAGTTCCTGATGCAAGGAAAAGCTGGTTACAACGCTCCTGTCTTTGAGAGGTACCAGCAGAGCGCAGAGTTTTTCATGTGTTCATGCCTAGGAAAAGGCACCCGCAATGTCCAAAAGACTCCAGGTGGTCTTATCTTCCGTCAGAGATGGAACAACATGCAATTCGTGACCAGTGCTGCATTCTTATCTACCGTCTACTCTGATTATCTGGAGTCTGCTGGTAGATACTTAAGATGTGGTGCAGGCATTGTTCCGCCGTCTGAGCTTCTCTCCTTTGCGCAGACACAGGTGGACTACATTCTGGGTGATAATCCGAGAGGGACCAGTTACATGGTAGGTTATGGTAGCAACTATCCTCAACAAGTTCACCACAGGGCTTCCTCCATTGTTTCCTATAAAGTTGACCCTAGGTTTGTAAGTTGCCGAGGTGGGTATGCTACTTGGTTTACCAGAAAAGCAAGCGATCCCAATCTCCTCACTGGTGCTATTGTCGGTGGGCCTGATGCATACGACAACTTTGCTGATCAAAGAGACAACTATGAGCAAACAGAGCCTGCCACCTACAACAATGCCCCTATGCTTGGAGTATTGGCTCGACTGGGTGGTGGTCGTGTTGGCTACCATCAGCCCCTTCCAGTGGTTCTTGCAGCCCCCAAACAAGTTGTCAACCAACCAAAGCCAGTTCCAGAACCCAAGATAACTCAAGATCCGGCTTCATTTGCTGCTGAAATTTCAATCCAACATAAATTGACATCTTCGTGGATTTGGGAGGGGAAAACGTATAGCCGATACTCCGTAATCCTCACTAACAAGTCGTCCAAGACCTTGACAAATCTCAAGCTTTCTGTGAGAAAGCTGTACGGTCCAATTTGGGGTCTCAGCAAATCTGGAGTTTCCTATGGATTTCCTTCATGGCTTAACTCCTTATCAGCCGGTAAAAGTCTTGAATTTGTTTATATTCATGCTGCTGCTCCAGCCGATGTCTCAGTCACTCACTACTCATTGTCCTGA 1881 0.4758 MEKVFNPIHFLRVLLLLCLPISLAGHDYRQALSKSILFFEAQRSGYLPKNQRVTWRANSGILDGKASGVNLVGGYYDAGDNVKFGLPMAFTVTMMSWSIIEYGKQMATNGELGHAMEAVKWGTDYFIKAHPQPYVLYGEVGDGNNDHYCWQRPEDMTTDRRAYKIDPSNPGSDLAGETAAAMAAASIVFRRSNPAYASELLRHAYQLFEFADKYRGKYDSSISVARKYYQSISGYNDELLWAAAWMYQATNNHYYLDYLGKNGDSMGGTGWRMTEFGWDVKYAGVQTLVAKFLMQGKAGYNAPVFERYQQSAEFFMCSCLGKGTRNVQKTPGGLIFRQRWNNMQFVTSAAFLSTVYSDYLESAGRYLRCGAGIVPPSELLSFAQTQVDYILGDNPRGTSYMVGYGSNYPQQVHHRASSIVSYKVDPRFVSCRGGYATWFTRKASDPNLLTGAIVGGPDAYDNFADQRDNYEQTEPATYNNAPMLGVLARLGGGRVGYHQPLPVVLAAPKQVVNQPKPVPEPKITQDPASFAAEISIQHKLTSSWIWEGKTYSRYSVILTNKSSKTLTNLKLSVRKLYGPIWGLSKSGVSYGFPSWLNSLSAGKSLEFVYIHAAAPADVSVTHYSLS* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00020 626 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 389 415 IPR018221 -
Pte12g00020 626 Pfam Glycosyl hydrolase family 9 28 487 IPR001701 GO:0004553|GO:0005975
Pte12g00020 626 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 463 481 IPR033126 -
Pte12g00020 626 PANTHER ENDO-1,4-BETA-GLUCANASE 19 491 - -
Pte12g00020 626 Gene3D - 25 492 IPR012341 GO:0005975
Pte12g00020 626 Pfam Carbohydrate binding domain CBM49 534 611 IPR019028 GO:0030246
Pte12g00020 626 SUPERFAMILY Six-hairpin glycosidases 25 491 IPR008928 GO:0005975
Pte12g00020 626 SMART CBM49_2 534 614 IPR019028 GO:0030246
Pte12g00020 626 FunFam Endoglucanase 24 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00020 Pte-Chr12 294036 298096 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00020 18 627 Glycoside Hydrolase AT1G64390 75.246 0.0 973
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00020 K01179 - jre:109010124 1035.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00020 12 294036 298096 Pte12g00020 12 294036 298096 RCT